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View Structure Prediction Details

Protein: gi|113644441, gi...
Organism: Oryza sativa Japonica Group
Length: 567 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|113644441, gi....

Description E-value Query
Range
Subject
Range
gi|77553658, gi|... - gi|77553658|gb|ABA96454.1| expressed protein [Oryza sativa (japonica cultivar-group)], gi|255670045|...
721.0 [0..1] [567..1]

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Predicted Domain #1
Region A:
Residues: [1-152]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKKNYYKE KMMRRKEEKK EEPETPRYRD RAKERREDQN PDYEPTELGS FHAVAPPGAD  60
   61 LRLADAHKIS IEKSKYLGGD LEHTHLVKGL DYALLHKVRS EIEKKPEAED GKDTQSRSTK 120
  121 EDQAVSFRTA AAKSVYQWII KPQSIIKSNE MF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [153-365]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPGRMAFIYN MEDGLTNDIP TTLHRSKADC SVPEEMVTVS VDGSVLDRIA KIMSYLRLGS  60
   61 SGKVLKKKKK ERDTKGKNSL ASGDYDEVAR PGQTNGSALK HQFEKDMPPP PPPRNNNLSK 120
  121 NEKPSAPVAR ADEDDIFVGD GVYYSVPNKE MSQSPVSEDM DESPHNHQKQ SYFTEEKPIY 180
  181 GPIPPSDPAQ AWPQPNAYDA IQAQMVAAGY QGE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [366-567]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WSGYQYGEQQ MAYPEQYMQQ SAQDCDVLAD PNITQDPRLM TQADKDRGLG SVFKRDDERL  60
   61 KQLREKDARE KDPNFISDSY SECYPGYQEY NHEIAGSDEE DDLSKMDMGG RAKGRLHRWD 120
  121 FETEEEWATY NDQKEAMPKA AFQFGVKMQD GRKTRKQNKD QKLTNDLHKI NKILARKKGD 180
  181 KDGGHDGGHY DDDMPSGKKQ RA

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 65.638272
Match: PF07807.2
Description: No description for PF07807.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle