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View Structure Prediction Details

Protein: gi|115454593, gi...
Organism: Oryza sativa Japonica Group
Length: 639 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115454593, gi....

Description E-value Query
Range
Subject
Range
gi|12240033 - gi|12240033|gb|AAG49550.1|AF264021_1 putative thiamine biosythesis protein ThiC [Poa secunda]
1104.0 [0..1] [639..1]

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Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALQPSFSS AMAMKSLKLP KTAVLPGFGG IARPQDVQDR SANFTCSRPR AASVTDQSTA  60
   61 EPAKPRQNKH TVDPSAPEFL P

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [82-209]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPSFEECFPR STKESREIVH EESGHVLKIP FRRIHLTGDE KHFDTYDTSG PQNISPRIGL  60
   61 PKIRKEWIDR REKLGGPRYT QMYYAKQGII TEEMLYCATR ENLSPEFVRS EVARGRAIIP 120
  121 SNKRHLEL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [210-450]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPMIVGRNFL VKVNANIGNS AVVSSIEEEV HKLQWATMWG ADTVMDLSTG RHIHETREWI  60
   61 LRNSSVPIGT VPIYQALEKV NGIAENLSWE VFRDTLIEQA EQGVDYFTIH AGVLLRYIPL 120
  121 TAKRMTGIVS RGGSIHAKWC LTYHKENFAY EHWDEILDIC NQYDVALSIG DGLRPGSIYD 180
  181 ANDSAQFAEL LTQGELTRRA WAKDVQVMNE GPGHIPMHKI PENMEKQLEW CNEAPFYTLG 240
  241 P

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [451-639]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTTDIAPGYD HITSAIGAAN IGALGTALLC YVTPKEHLGL PNRDDVKTGV ISYKISAHAA  60
   61 DLAKGHPYAQ AWDDTLSKAR FEFRWLDQFA LSLDPVTAMS FHDETLPSEG AKVAHFCSMC 120
  121 GPKFCSMKIT EDIRKYADEH GYGTVEEAVI QGMNAMSAEF SAARKTISGE QHGEAGGEIY 180
  181 VPESYTARK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle