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View Structure Prediction Details

Protein: gi|108707651, gi...
Organism: Oryza sativa Japonica Group
Length: 264 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108707651, gi....

Description E-value Query
Range
Subject
Range
gi|159130796 - gi|159130796|gb|EDP55909.1| vacuolar sorting receptor (Mrl1), putative [Aspergillus fumigatus A1163]
gi|66847954, gi|... - gi|70990946|ref|XP_750322.1| vacuolar sorting receptor (Mrl1) [Aspergillus fumigatus Af293], gi|6684...
238.0 [0..12] [263..11]

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Predicted Domain #1
Region A:
Residues: [1-200]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSSRGQRPP PLQLAVACGF VHLICLAAVA GGGGPCEFSV ARGGKLYSFS LASPTTAHRH  60
   61 GVLSEDGFYK VAVNNSVLWF QLCDQMIFNF DPPVCLNCED CGGPQRCGTQ CSALVSNNRG 120
  121 GYDVCTTIGR ASKSHISLID DINPQKGVVV KMFSSKCSIS VYIYCDSTVA HVSDQFVLSG 180
  181 SCDYATTLRH PSGCAQSMSA 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.522879
Match: 1q25A
Description: Crystal structure of N-terminal 3 domains of CI-MPR
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [201-264]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGNGWGWLAT SFVTILCLLG GYILIGSIYR YYFLGIHSVE AIPNLEFWIS LPQTIKVSSL  60
   61 CFCF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle