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View Structure Prediction Details

Protein: gi|115451381, gi...
Organism: Oryza sativa Japonica Group
Length: 343 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115451381, gi....

Description E-value Query
Range
Subject
Range
SURF1_ARATH - Surfeit locus protein 1 OS=Arabidopsis thaliana GN=SURF1 PE=2 SV=1
248.0 [0..1] [342..1]

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Predicted Domain #1
Region A:
Residues: [1-249]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAALSKLLR RRLRGGGHRL LPSRPSTSAA SQPPPPPPSA ATPPPPGAGK EAGAWSKLFL  60
   61 FAPGAITFGL GSWQLFRRQE KIEMLDYRTR RLEMEPIAWN QMAPSDLSAG VDPATPEFRR 120
  121 IVCEGDFDEE RSVFVGPRSR SISGVTENGY YVVTPLIPRP SEHGSSWPPI LVNRGWVPRD 180
  181 WRDKNVQDHQ GVREVPEYKE ADKKTDGKGS WWKFWSNSKE PEQSCEIEKP VKPPVRVLGV 240
  241 IRGSEKPSI

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.953
Match: 1k3bA
Description: Dipeptidyl peptidase I (cathepsin C), exclusion domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [250-343]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FVPANEPSVG QWFYVDVPMI ARACGLPENT IYIEDINEDV SPTNPYPVPK DVSTLIHHSV  60
   61 MPHDHLKYTV TWYTLSAAVT FMAAKRIKAK KVKL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle