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View Structure Prediction Details

Protein: gi|108706374, gi...
Organism: Oryza sativa Japonica Group
Length: 610 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108706374, gi....

Description E-value Query
Range
Subject
Range
gi|222612815, gi... - gi|78708621|gb|ABB47596.1| calmodulin-binding family protein, putative, expressed [Oryza sativa (jap...
770.0 [0..1] [601..1]

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Predicted Domain #1
Region A:
Residues: [1-241]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLSISYPPD DYLPTEEDTD QMFVRSLSSD NLSTIETFES PPALLDSLSS QRPIIKESFN  60
   61 FKKSEGDPFH VETTVSLMSP KPGKEKSCTH KRTILPRYGS MEYLPPHSPV VGMISPKHQA 120
  121 AAVRVQKVYK SFRTRRQLAD CAVLVEQRWW KLIDFALLKH NSVSFFEEEK PESALSRWSR 180
  181 ARTKAAKVGK GLSKDEKAQK LALQHWLEAI DPRHRYGHNL HYYYQHWLHC ESKQPFFYWL 240
  241 D

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [242-374]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGEGKDVSME DHCPRWKLLQ QCIRYLGPKE REFYEVVIEN KKLLYKMSRK IVDTSEGPKN  60
   61 SKWIFVLSTT RVLYIGTKSK GTFQHSSFLA GGATSAAGRL VVDNGILKAV WPHSGHYRPT 120
  121 EANFREFMMY LKK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [375-523]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNVDLANIKL SPSEDEEDEC LRSRSGRSQL EPTEPGKPEK EEDATADDNG TTTVAAQAAP  60
   61 PSTTGGEPAT PVMKRSSSGN RLQRKRPPRL TLDKSRLAKG VAEQDAGSFG DRLDFCKVNL 120
  121 FRGGEEAEEA VVVPQEKILR RLNSRMTMN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [524-610]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SYQLGKQLSL RWTTGAGPRI GCVRDYPPEL QFRVMEQISL TPRGGAGPLR LGSTATPRQS  60
   61 PCAPLPSPAP LYAAAGTPTS LLQHGAA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle