YRC Public Data Repository - Protein Structure Prediction

Protein:	MND1
Organism:	Homo sapiens
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MND1.

Description	E-value	Query Range	Subject Range
gi\|50746128 - gi\|50746128\|ref\|XP_420365.1\| PREDICTED: similar to tripartite motif-containing 2; tripartite motif p...	5.0E-59	[1..205]	[897..1101]
gi\|109466950, gi... - gi\|109466950\|ref\|XP_001072054.1\| PREDICTED: similar to GAJ protein [Rattus norvegicus], gi\|109464988...	2.0E-55	[2..205]	[99..302]
gi\|109075993 - gi\|109075993\|ref\|XP_001087396.1\| PREDICTED: similar to GAJ protein [Macaca mulatta]	7.0E-45	[1..205]	[1..205]
MND1_MOUSE - Meiotic nuclear division protein 1 homolog OS=Mus musculus GN=Mnd1 PE=1 SV=1	1.0E-44	[1..205]	[1..205]
MND1_BOVIN - Meiotic nuclear division protein 1 homolog OS=Bos taurus GN=MND1 PE=2 SV=1	2.0E-44	[1..205]	[1..205]
gi\|73978315 - gi\|73978315\|ref\|XP_539771.2\| PREDICTED: similar to GAJ protein [Canis familiaris]	2.0E-43	[1..205]	[1..205]
gi\|68354610 - gi\|68354610\|ref\|XP_693671.1\| PREDICTED: hypothetical protein [Danio rerio]	3.0E-41	[1..204]	[1..204]
MND1_XENLA - Meiotic nuclear division protein 1 homolog OS=Xenopus laevis GN=mnd1 PE=2 SV=1	9.0E-41	[1..205]	[1..205]
gi\|62751486, gi\|... - gi\|62751486\|ref\|NP_001015849.1\| MGC97859 protein [Xenopus (Silurana) tropicalis], gi\|58477461\|gb\|AAH...	2.0E-40	[1..205]	[1..205]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKKGLSAE EKRTRMMEIF SETKDVFQLK DLEKIAPKEK GITAMSVKEV LQSLVDDGMV  60
   61 DCERIGTSNY YWAFPSKALH ARKHKLEVLE SQLSEGSQKH ASLQKSIEKA KIGRCETEER 120
  121 TRLAKELSSL RDQREQLKAE VEKYKDCDPQ VVEEIRQANK VAKEAANRWT DNIFAIKSWA 180
  181 KRKFGFEENK IDRTFGIPED FDYID

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.09691
Match:	2i1jA
Description:	No description for 2i1jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits