| Protein: | HNRNPM |
| Organism: | Homo sapiens |
| Length: | 730 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HNRNPM.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-71 | [17..730] | [17..730] |
|
|
1.0E-70 | [20..730] | [19..729] |
|
|
2.0E-70 | [15..730] | [15..729] |
|
|
9.0E-69 | [15..730] | [15..715] |
|
Region A: Residues: [1-187] |
1 11 21 31 41 51
| | | | | |
1 MAAGVEAAAE VAATEIKMEE ESGAPGVPSG NGAPGPKGEG ERPAQNEKRK EKNIKRGGNR 60
61 FEPYANPTKR YRAFITNIPF DVKWQSLKDL VKEKVGEVTY VELLMDAEGK SRGCAVVEFK 120
121 MEESMKKAAE VLNKHSLSGR PLKVKEDPDG EHARRAMQKV MATTGGMGMG PGGPGMITIP 180
181 PSILNNP
|
| Detection Method: |  |
| Confidence: | 6.09691 |
| Match: | 1welA |
| Description: | Solution structure of RNA binding domain in NP_006038 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [188-293] |
1 11 21 31 41 51
| | | | | |
1 NIPNEIIHAL QAGRLGSTVF VANLDYKVGW KKLKEVFSMA GVVVRADILE DKDGKSRGIG 60
61 TVTFEQSIEA VQAISMFNGQ LLFDRPMHVK MDERALPKGD FFPPER
|
| Detection Method: | |
| Confidence: | 14.69897 |
| Match: | 2do0A |
| Description: | No description for 2do0A was found. |
|
Region A: Residues: [294-368] |
1 11 21 31 41 51
| | | | | |
1 PQQLPHGLGG IGMGLGPGGQ PIDANHLNKG IGMGNIGPAG MGMEGIGFGI NKMGGMEGPF 60
61 GGGMENMGRF GSGMN
|
| Detection Method: | |
| Confidence: | 0.97 |
| Match: | 1p9hA |
| Description: | CRYSTAL STRUCTURE OF THE COLLAGEN-BINDING DOMAIN OF YERSINIA ADHESIN YadA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [369-647] |
1 11 21 31 41 51
| | | | | |
1 MGRINEILSN ALKRGEIIAK QGGGGGGGSV PGIERMGPGI DRLGGAGMER MGAGLGHGMD 60
61 RVGSEIERMG LVMDRMGSVE RMGSGIERMG PLGLDHMASS IERMGQTMER IGSGVERMGA 120
121 GMGFGLERMA APIDRVGQTI ERMGSGVERM GPAIERMGLS MERMVPAGMG AGLERMGPVM 180
181 DRMATGLERM GANNLERMGL ERMGANSLER MGLERMGANS LERMGPAMGP ALGAGIERMG 240
241 LAMGGGGGAS FDRAIEMERG NFGGSFAGSF GGAGGHAPG
|
| Detection Method: | |
| Confidence: | 1.13 |
| Match: | 2efkA |
| Description: | No description for 2efkA was found. |
| Term | Confidence | Notes |
| binding | 2.18655500954725 | bayes_pls_golite062009 |
| protein binding | 1.03745306645514 | bayes_pls_golite062009 |
| catalytic activity | 0.00204734407654122 | bayes_pls_golite062009 |
|
Region A: Residues: [648-730] |
1 11 21 31 41 51
| | | | | |
1 VARKACQIFV RNLPFDFTWK MLKDKFNECG HVLYADIKME NGKSKGCGVV KFESPEVAER 60
61 ACRMMNGMKL SGREIDVRID RNA
|
| Detection Method: | |
| Confidence: | 19.69897 |
| Match: | 2dgvA |
| Description: | No description for 2dgvA was found. |
