| Protein: | LDB2 |
| Organism: | Homo sapiens |
| Length: | 373 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LDB2.
| Description | E-value | Query Range |
Subject Range |
|
|
565.0 | [0..1] | [373..1] |
|
|
564.0 | [0..1] | [373..1] |
|
|
564.0 | [0..1] | [373..1] |
|
|
556.0 | [0..1] | [373..1] |
|
|
541.0 | [0..1] | [373..1] |
|
|
527.0 | [0..1] | [373..1] |
|
|
526.0 | [0..25] | [373..1] |
|
Region A: Residues: [1-123] |
1 11 21 31 41 51
| | | | | |
1 MSSTPHDPFY SSPFGPFYRR HTPYMVQPEY RIYEMNKRLQ SRTEDSDNLW WDAFATEFFE 60
61 DDATLTLSFC LEDGPKRYTI GRTLIPRYFS TVFEGGVTDL YYILKHSKES YHNSSITVDC 120
121 DQC
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.531 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.465 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.441 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.433 | N/A | N/A | d.107.1 | Ran-binding protein mog1p |
| View | Download | 0.418 | N/A | N/A | c.59.1 | MurD-like peptide ligases, peptide-binding domain |
| View | Download | 0.356 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.342 | N/A | N/A | d.104.1 | Class II aaRS and biotin synthetases |
| View | Download | 0.320 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.302 | N/A | N/A | d.104.1 | Class II aaRS and biotin synthetases |
|
Region A: Residues: [124-245] |
1 11 21 31 41 51
| | | | | |
1 TMVTQHGKPM FTKVCTEGRL ILEFTFDDLM RIKTWHFTIR QYRELVPRSI LAMHAQDPQV 60
61 LDQLSKNITR MGLTNFTLNY LRLCVILEPM QELMSRHKTY NLSPRDCLKT CLFQKWQRMV 120
121 AP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.820 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.817 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.809 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.805 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.761 | b.61.1 | Avidin/streptavidin |
| View | Download | 0.760 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.757 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.742 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.722 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.612 | f.18.1 | F1F0 ATP synthase subunit A |
|
Region A: Residues: [246-373] |
1 11 21 31 41 51
| | | | | |
1 PAEPTRQPTT KRRKRKNSTS STSNSSAGNN ANSTGSKKKT TAANLSLSSQ VPDVMVVGEP 60
61 TLMGGEFGDE DERLITRLEN TQYDAANGMD DEEDFNNSPA LGNNSPWNSK PPATQETKSE 120
121 NPPPQASQ
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
