YRC Public Data Repository - Protein Structure Prediction

Protein:	HCRT
Organism:	Homo sapiens
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HCRT.

Description	E-value	Query Range	Subject Range
gi\|109115468 - gi\|109115468\|ref\|XP_001108991.1\| PREDICTED: similar to orexin precursor [Macaca mulatta]	179.0	[0..1]	[131..1]
gi\|76644868 - gi\|76644868\|ref\|XP_609741.2\| PREDICTED: hypocretin (orexin) neuropeptide precursor [Bos taurus]	177.0	[0..1]	[131..1]
OREX_CANLF - Orexin OS=Canis lupus familiaris GN=HCRT PE=3 SV=1	172.0	[0..1]	[131..1]
OREX_MOUSE - Orexin OS=Mus musculus GN=Hcrt PE=2 SV=1	171.0	[0..1]	[131..1]
OREX_PIG - Orexin OS=Sus scrofa GN=HCRT PE=2 SV=1	168.0	[0..1]	[131..1]
OREX_RAT - Orexin OS=Rattus norvegicus GN=Hcrt PE=1 SV=1	166.0	[0..1]	[131..1]
gi\|114667299 - gi\|114667299\|ref\|XP_001166578.1\| PREDICTED: orexin [Pan troglodytes]	164.0	[0..1]	[131..1]
gi\|45383750, gi\|... - gi\|45383750\|ref\|NP_989516.1\| hypocretin (orexin) neuropeptide [Gallus gallus], gi\|26453322\|dbj\|BAC43...	141.0	[0..34]	[130..29]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLPSTKVSW AAVTLLLLLL LLPPALLSSG AAAQPLPDCC RQKTCSCRLY ELLHGAGNHA  60
   61 AGILTLGKRR SGPPGLQGRL QRLLQASGNH AAGILTMGRR AGAEPAPRPC LGRRCSAPAA 120
  121 ASVAPGGQSG I

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	96.130768
Match:	PF02072.6
Description:	No description for PF02072.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits