YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL24
Organism:	Homo sapiens
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL24.

Description	E-value	Query Range	Subject Range
gi\|50729688 - gi\|50729688\|ref\|XP_416616.1\| PREDICTED: similar to Rpl24 protein [Gallus gallus]	195.0	[0..1]	[157..155]
gi\|76660704 - gi\|76660704\|ref\|XP_585396.2\| PREDICTED: similar to ribosomal protein L24-like [Bos taurus]	181.0	[0..1]	[108..122]
gi\|109032847 - gi\|109032847\|ref\|XP_001097920.1\| PREDICTED: similar to ribosomal protein L24 isoform 1 [Macaca mulat...	175.0	[0..1]	[131..1]
gi\|82995895, gi\|... - gi\|82996540\|ref\|XP_916736.1\| PREDICTED: similar to ribosomal protein L24-like [Mus musculus], gi\|829...	175.0	[0..1]	[153..23]
RLP24_RAT - Probable ribosome biogenesis protein RLP24 OS=Rattus norvegicus GN=Rsl24d1 PE=2 SV=1	171.0	[0..1]	[153..1]
gi\|61372242 - gi\|61372242\|gb\|AAX43808.1\| ribosomal protein L24 [synthetic construct]	170.0	[0..1]	[157..1]
gi\|74000755 - gi\|74000755\|ref\|XP_535488.2\| PREDICTED: similar to ribosomal protein L24-like [Canis familiaris]	170.0	[0..1]	[153..1]
RL24_ICTPU - 60S ribosomal protein L24 OS=Ictalurus punctatus GN=rpl24 PE=2 SV=1	170.0	[0..1]	[157..1]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVELCSFSG YKIYPGHGRR YARTDGKVFQ FLNAKCESAF LSKRNPRQIN WTVLYRRKHK  60
   61 KGQSEEIQKK RTRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.39794
Match:	1s1iS
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [75-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVKFQRAITG ASLADIMAKR NQKPEVRKAQ REQAIRAAKE AKKAKQASKK TAMAAAKAPT  60
   61 KAAPKQKIVK PVKVSAPRVG GKR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits