YRC Public Data Repository - Protein Structure Prediction

Protein:	HSTC_ARATH
Organism:	Arabidopsis thaliana
Length:	386 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HSTC_ARATH.

Description	E-value	Query Range	Subject Range
gi\|30681973 - gi\|30681973\|ref\|NP_187801.2\| prenyltransferase/ zinc ion binding [Arabidopsis thaliana]	233.0	[0..1]	[386..562]
3825.m02509, 128... - /numExons=12 /strand=- /begin=98461 /end=104446 /seqFile=euttg.scaffolds.fasta /startCodon=0 /coords... gi\|89295687, gi\|... - gi\|89295687\|gb\|EAR93675.1\| 4-hydroxybenzoate polyprenyl transferase family protein [Tetrahymena ther...	191.0	[0..81]	[384..966]
gi\|71005862, gi\|... - gi\|71005862\|ref\|XP_757597.1\| hypothetical protein UM01450.1 [Ustilago maydis 521], ref\|XP_399065.1\| ...	183.0	[0..10]	[312..557]
Coq2-PA - The gene Coenzyme Q biosynthesis protein 2 is referred to in FlyBase by the symbol Dmel\Coq2 (CG9613... gi\|220949886 - gi\|220949886\|gb\|ACL87486.1\| Coq2-PA [synthetic construct]	176.0	[0..17]	[383..3]
COQ2_DROPS - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=... gi\|125775189, gi... - gi\|54638587\|gb\|EAL27989.1\| GA21912 [Drosophila pseudoobscura pseudoobscura], gi\|125775189\|ref\|XP_001...	175.0	[0..16]	[383..2]
COQ2_BOVIN - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Bos taurus GN=COQ2 PE=2 SV=1	171.0	[0..31]	[383..11]
gi\|114593901 - gi\|114593901\|ref\|XP_526592.2\| PREDICTED: para-hydroxybenzoate-polyprenyltransferase, mitochondrial i...	169.0	[0..7]	[383..39]
COQ2_DICDI - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Dictyostelium discoideum GN=coq2" PE=3 SV=... gi\|66813452, gi\|... - gi\|66813452\|ref\|XP_640905.1\| 4-hydroxybenzoate nonaprenyltransferase [Dictyostelium discoideum AX4],...	169.0	[0..83]	[384..160]
gi\|115732277, gi... - gi\|115898775\|ref\|XP_792747.2\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi\|11...	169.0	[0..31]	[384..6]

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Predicted Domain #1

Region A:
Residues: [1-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELSISQSPR VRFSSLAPRF LAASHHHRPS VHLAGKFISL PRDVRFTSLS TSRMRSKFVS  60
   61 TNYRKISIRA CSQVGAAESD DPVLDRIARF QNACWRFLRP HTIRGTALGS TALVTRALIE 120
  121 NTHLIKWSLV LKALSGLLAL ICGNGYIVGI NQIYDIGIDK VNKPYLPIAA GDLSVQSAWL 180
  181 LVIFFAIAGL LVVGFNFGPF ITSLYSLGLF LGTIYSVPPL RMKRFPVAAF LIIATVRGFL 240
  241 LNFGVYHATR AALGLPFQWS APVA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [265-386]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FITSFVTLFA LVIAITKDLP DVEGDRKFQI STLATKLGVR NIAFLGSGLL LVNYVSAISL  60
   61 AFYMPQVFRG SLMIPAHVIL ASGLIFQTWV LEKANYTKEA ISGYYRFIWN LFYAEYLLFP 120
  121 FL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits