YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|14250060, gi\|...
Organism:	Homo sapiens
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|14250060, gi|....

Description	E-value	Query Range	Subject Range
TV23B_PONAB - Golgi apparatus membrane protein TVP23 homolog B OS=Pongo abelii GN=TVP23B PE=2 SV=1 FA18B_PONPY - Protein FAM18B - Pongo pygmaeus (Orangutan)	4.0E-88	[1..205]	[1..205]
gi\|109113403 - gi\|109113403\|ref\|XP_001084390.1\| PREDICTED: similar to Protein FAM18B [Macaca mulatta]	5.0E-88	[1..205]	[1..205]
FAM18B - family with sequence similarity 18, member B	9.0E-88	[1..205]	[1..205]
gi\|114587678 - gi\|114587678\|ref\|XP_511818.2\| PREDICTED: hypothetical protein [Pan troglodytes]	5.0E-87	[1..205]	[1..205]
TV23B_MOUSE - Golgi apparatus membrane protein TVP23 homolog B OS=Mus musculus GN=Tvp23b PE=1 SV=1	1.0E-86	[1..205]	[1..205]
gi\|73956070 - gi\|73956070\|ref\|XP_546636.2\| PREDICTED: similar to RIKEN cDNA 1810036I24 [Canis familiaris]	5.0E-86	[1..205]	[1..205]
gi\|205277356, gi... - gi\|205277356\|ref\|NP_001101038.2\| hypothetical protein LOC687358 [Rattus norvegicus], gi\|149052915\|gb...	2.0E-85	[1..205]	[1..205]
TV23B_BOVIN - Golgi apparatus membrane protein TVP23 homolog B OS=Bos taurus GN=TVP23B PE=2 SV=1	8.0E-85	[1..205]	[1..205]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQQDSNDDT EDVSLFDAEE ETTNRPRKAK IRHPVASFFH LFFRVSAIIV YLLCGLLSSS  60
   61 FITCMVTIIL LLSCDFWAVK NVTGRLMVGL RWWNHIDEDG KSHWVFESRK ESSQENKTVS 120
  121 EAESRIFWLG LIACPVLWVI FAFSALFSFR VKWLAVVIMG VVLQGANLYG YIRCKVRSRK 180
  181 HLTSMATSYF GKQFLRQNTG DDQTS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	101.154902
Match:	PF05832.3
Description:	No description for PF05832.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits