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View Structure Prediction Details

Protein: gi|119631635, gi...
Organism: Homo sapiens
Length: 224 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|119631635, gi....

Description E-value Query
Range
Subject
Range
gi|60652733, gi|... - gi|60652733|gb|AAX29061.1| glutamate decarboxylase 1 [synthetic construct], gi|30584475|gb|AAP36490....
359.0 [0..14] [224..14]
gi|204232, gi|21... - pir||I59173 glutamate decarboxylase - rat, gi|204232|gb|AAA41185.1| glutamate decarboxylase
355.0 [0..14] [224..13]
gi|1082397 - gi|1082397|pir||S51776 glutamate decarboxylase (EC 4.1.1.15) - human
350.0 [0..3] [213..2]
gi|46048860, gi|... - gi|46048860|ref|NP_990244.1| glutamate decarboxylase 1 (brain, 67kDa) [Gallus gallus], gi|4103978|gb...
341.0 [0..6] [213..2]
DCE1_PANTR - Glutamate decarboxylase 1 OS=Pan troglodytes GN=GAD1 PE=2 SV=1
337.0 [0..14] [213..14]

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Predicted Domain #1
Region A:
Residues: [1-84]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSTPSSSA TSSNAGADPN TTNLRPTTYD TWCGVAHGCT RKLGLKICGF LQRTNSLEEK  60
   61 SRLVSAFKER QSSKNLLSCE NSDR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.383 N/A N/A d.51.1 Eukaryotic type KH-domain (KH-domain type I)
View Download 0.372 N/A N/A a.77.1 DEATH domain
View Download 0.361 N/A N/A a.77.1 DEATH domain
View Download 0.338 N/A N/A a.39.1 EF-hand
View Download 0.337 N/A N/A a.77.1 DEATH domain
View Download 0.335 N/A N/A d.224.1 SufE-like
View Download 0.333 N/A N/A a.39.1 EF-hand
View Download 0.305 N/A N/A a.77.1 DEATH domain
View Download 0.278 N/A N/A c.23.12 Formate/glycerate dehydrogenase catalytic domain-like
View Download 0.246 N/A N/A a.39.1 EF-hand

Predicted Domain #2
Region A:
Residues: [85-224]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DARFRRTETD FSNLFARDLL PAKNGEEQTV QFLLEVVDIL LNYVRKTFDR STKVLDFHHP  60
   61 HQLLEGMEGF NLELSDHPES LEQILVDCRD TLKYGVRTGH PRFFNQLSTG LDIIGLAGEW 120
  121 LTSTANTNMP SDMRECWLLR 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.045757
Match: 2okjA
Description: No description for 2okjA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle