YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CENPO
Organism: Homo sapiens
Length: 300 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CENPO.

Description E-value Query
Range
Subject
Range
gi|114576462 - gi|114576462|ref|XP_001147011.1| PREDICTED: centromere protein O [Pan troglodytes]
0.0 [1..300] [1..300]
CENPO_MOUSE - Centromere protein O OS=Mus musculus GN=Cenpo PE=2 SV=1
0.0 [1..300] [1..298]
gi|14042842 - gi|14042842|dbj|BAB55414.1| unnamed protein product [Homo sapiens]
0.0 [16..300] [10..294]
gi|109102215 - gi|109102215|ref|XP_001082313.1| PREDICTED: hypothetical protein, partial [Macaca mulatta]
0.0 [17..300] [1..283]
CENPO_BOVIN - Centromere protein O OS=Bos taurus GN=CENPO PE=2 SV=1
0.0 [1..300] [1..296]
gi|73980622 - gi|73980622|ref|XP_853505.1| PREDICTED: hypothetical protein XP_848412 [Canis familiaris]
0.0 [1..299] [1..294]
gi|109479100 - gi|109479100|ref|XP_001070398.1| PREDICTED: hypothetical protein [Rattus norvegicus]
0.0 [17..300] [20..302]

Back

Predicted Domain #1
Region A:
Residues: [1-111]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQANPLRPD GESKGGVLAH LERLETQVSR SRKQSEELQS VQAQEGALGT KIHKLRRLRD  60
   61 ELRAVVRHRR ASVKACIANV EPNQTVEINE QEALEEKLEN VKAILQAYHF T

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.02
Match: 1nknA
Description: Myosin S2N51
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [112-206]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLSGKLTSRG VCVCISTAFE GNLLDSYFVD LVIQKPLRIH HHSVPVFIPL EEIAAKYLQT  60
   61 NIQHFLFSLC EYLNAYSGRK YQADRLQSDF AALLT

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 25.657577
Match: PF09496.1
Description: No description for PF09496.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [207-300]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPLQRNPLCN LLSFTYKLDP GGQSFPFCAR LLYKDLTATL PTDVTVTCQG VEVLSTSWEE  60
   61 QRASHETLFC TKPLHQVFAS FTRKGEKLDM SLVS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle