YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25453484, gi\|...
Organism:	Homo sapiens
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25453484, gi|....

Description	E-value	Query Range	Subject Range
COQ7 - coenzyme Q7 homolog, ubiquinone (yeast)	6.0E-93	[1..217]	[1..217]
gi\|109127736 - gi\|109127736\|ref\|XP_001083388.1\| PREDICTED: similar to COQ7 protein [Macaca mulatta]	7.0E-92	[1..217]	[1..217]
gi\|114661284, gi... - gi\|114661288\|ref\|XP_001153055.1\| PREDICTED: COQ7 protein isoform 6 [Pan troglodytes], gi\|114661286\|r...	1.0E-91	[1..217]	[1..217]
COQ7_BOVIN - 5-demethoxyubiquinone hydroxylase, mitochondrial OS=Bos taurus GN=COQ7 PE=2 SV=1	1.0E-87	[1..217]	[1..217]
gi\|73958985 - gi\|73958985\|ref\|XP_536955.2\| PREDICTED: similar to Ubiquinone biosynthesis protein COQ7 homolog (Coe...	3.0E-86	[1..216]	[1..216]
COQ7_MOUSE - 5-demethoxyubiquinone hydroxylase, mitochondrial OS=Mus musculus GN=Coq7 PE=1 SV=3	9.0E-86	[1..216]	[1..216]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCAGAAAAP RLWRLRPGAR RSLSAYGRRT SVRFRSSGMT LDNISRAAVD RIIRVDHAGE  60
   61 YGANRIYAGQ MAVLGRTSVG PVIQKMWDQE KDHLKKFNEL MVTFRVRPTV LMPLWNVLGF 120
  121 ALGAGTALLG KEGAMACTVA VEESIAHHYN NQIRTLMEED PEKYEELLQL IKKFRDEELE 180
  181 HHDIGLDHDA ELAPAYAVLK SIIQAGCRVA IYLSERL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.86
Match:	2fzfA
Description:	Hypothetical Protein Pfu-1136390-001 From Pyrococcus furiosus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits