YRC Public Data Repository - Protein Structure Prediction

Protein:	PEX11G
Organism:	Homo sapiens
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEX11G.

Description	E-value	Query Range	Subject Range
gi\|34870080, gi\|... - gi\|34870080\|ref\|XP_213688.2\| PREDICTED: similar to peroxisomal biogenesis factor 11c [Rattus norvegi...	4.0E-68	[1..241]	[1..241]
PX11C_MOUSE - Peroxisomal membrane protein 11C OS=Mus musculus GN=Pex11g PE=1 SV=2	6.0E-66	[1..241]	[1..241]
gi\|109123166 - gi\|109123166\|ref\|XP_001089739.1\| PREDICTED: similar to peroxisomal biogenesis factor 11 gamma [Macac...	4.0E-65	[1..241]	[1..241]
gi\|114674979 - gi\|114674979\|ref\|XP_512327.2\| PREDICTED: similar to Peroxisomal biogenesis factor 11 gamma [Pan trog...	8.0E-64	[1..241]	[1..241]
gi\|57102054 - gi\|57102054\|ref\|XP_542110.1\| PREDICTED: similar to peroxisomal biogenesis factor 11 gamma [Canis fam...	3.0E-56	[1..241]	[1..241]
gi\|59802984 - gi\|59802984\|gb\|AAX07686.1\| peroxisomal membrane protein-like protein [Magnaporthe grisea] gi\|38099174, gi\|... - gi\|39954150\|ref\|XP_364051.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA46553....	5.0E-54	[4..231]	[12..231]
gi\|85097341 - gi\|85097341\|ref\|XP_960428.1\| hypothetical protein NCU04802 [Neurospora crassa OR74A] gi\|28921919, gi\|... - gi\|32407130\|ref\|XP_324159.1\| hypothetical protein [Neurospora crassa], gi\|28921919\|gb\|EAA31192.1\| hy...	2.0E-53	[4..231]	[12..231]
gi\|194668759, gi... - gi\|76621954\|ref\|XP_874530.1\| PREDICTED: similar to peroxisomal biogenesis factor 11 gamma isoform 2 ...	2.0E-53	[1..240]	[1..240]
gi\|42554079, gi\|... - gi\|46134283\|ref\|XP_389457.1\| hypothetical protein FG09281.1 [Gibberella zeae PH-1], gi\|42554079\|gb\|E...	8.0E-53	[4..231]	[12..232]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLSGLASA LESYRGRDRL IRVLGYCCQL VGGVLVEQCP ARSEVGTRLL VVSTQLSHCR  60
   61 TILRLFDDLA MFVYTKQYGL GAQEEDAFVR CVSVLGNLAD QLYYPCEHVA WAADARVLHV 120
  121 DSSRWWTLST TLWALSLLLG VAR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [144-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLWMLLKLRQ RLRSPTAPFT SPLPRGKRRA MEAQMQSEAL SLLSNLADLA NAVHWLPRGV  60
   61 LWAGRFPPWL VGLMGTISSI LSMYQAARAG GQAEATTP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits