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View Structure Prediction Details

Protein: LRFN3
Organism: Homo sapiens
Length: 628 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LRFN3.

Description E-value Query
Range
Subject
Range
gi|55649067 - gi|55649067|ref|XP_524229.1| PREDICTED: leucine rich repeat and fibronectin type III domain containi...
0.0 [17..628] [17..628]
gi|37181360 - gi|37181360|gb|AAQ88494.1| AILP5865 [Homo sapiens]
0.0 [17..628] [17..627]
gi|109124419 - gi|109124419|ref|XP_001100482.1| PREDICTED: similar to leucine rich repeat and fibronectin type III ...
0.0 [17..628] [17..628]
LRFN3_MOUSE - Leucine-rich repeat and fibronectin type-III domain-containing protein 3 OS=Mus musculus GN=Lrfn3 PE...
0.0 [25..628] [25..626]
LRFN3_RAT - Leucine-rich repeat and fibronectin type-III domain-containing protein 3 OS=Rattus norvegicus GN=Lrf...
0.0 [17..628] [17..626]
gi|47220103 - gi|47220103|emb|CAF99016.1| unnamed protein product [Tetraodon nigroviridis]
1.0E-99 [11..617] [14..611]

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Predicted Domain #1
Region A:
Residues: [1-532]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILPLLLCL LPLAPASSPP QSATPSPCPR RCRCQTQSLP LSVLCPGAGL LFVPPSLDRR  60
   61 AAELRLADNF IASVRRRDLA NMTGLLHLSL SRNTIRHVAA GAFADLRALR ALHLDGNRLT 120
  121 SLGEGQLRGL VNLRHLILSN NQLAALAAGA LDDCAETLED LDLSYNNLEQ LPWEALGRLG 180
  181 NVNTLGLDHN LLASVPAGAF SRLHKLARLD MTSNRLTTIP PDPLFSRLPL LARPRGSPAS 240
  241 ALVLAFGGNP LHCNCELVWL RRLAREDDLE ACASPPALGG RYFWAVGEEE FVCEPPVVTH 300
  301 RSPPLAVPAG RPAALRCRAV GDPEPRVRWV SPQGRLLGNS SRARAFPNGT LELLVTEPGD 360
  361 GGIFTCIAAN AAGEATAAVE LTVGPPPPPQ LANSTSCDPP RDGDPDALTP PSAASASAKV 420
  421 ADTGPPTDRG VQVTEHGATA ALVQWPDQRP IPGIRMYQIQ YNSSADDILV YRMIPAESRS 480
  481 FLLTDLASGR TYDLCVLAVY EDSATGLTAT RPVGCARFST EPALRPCGAP HA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.69897
Match: 2id5A
Description: No description for 2id5A was found.

Predicted Domain #2
Region A:
Residues: [533-628]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFLGGTMIIA LGGVIVASVL VFIFVLLMRY KVHGGQPPGK AKIPAPVSSV CSQTNGALGP  60
   61 TPTPAPPAPE PAALRAHTVV QLDCEPWGPG HEPVGP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle