YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPL12
Organism:	Homo sapiens
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL12.

Description	E-value	Query Range	Subject Range
RM12_BOVIN - 39S ribosomal protein L12, mitochondrial OS=Bos taurus GN=MRPL12 PE=1 SV=1	7.0E-53	[1..198]	[1..198]
gi\|109119096 - gi\|109119096\|ref\|XP_001111712.1\| PREDICTED: mitochondrial ribosomal protein L12 [Macaca mulatta]	1.0E-51	[1..198]	[1..198]
gi\|54035364, gi\|... - gb\|AAH86163.1\| Unknown (protein for MGC:98601) [Xenopus laevis], gb\|AAH83969.1\| Unknown (protein fo... RM12_MOUSE - 39S ribosomal protein L12, mitochondrial OS=Mus musculus GN=Mrpl12 PE=1 SV=2	2.0E-51	[1..198]	[1..201]
gi\|114670948 - gi\|114670948\|ref\|XP_001163363.1\| PREDICTED: mitochondrial ribosomal protein L12 [Pan troglodytes] sp\|P52815\|RM12_H... - 39S ribosomal protein L12, mitochondrial OS=Homo sapiens GN=MRPL12 PE=1 SV=2 VAR_052001, 39S ribosom...	5.0E-51	[1..198]	[1..198]
gi\|1313962 - gi\|1313962\|emb\|CAA56249.1\| mitochondrial ribosomal protein L7L12 [Homo sapiens]	6.0E-51	[1..198]	[1..198]
gi\|73964761 - gi\|73964761\|ref\|XP_850016.1\| PREDICTED: similar to 39S ribosomal protein L12, mitochondrial precurso...	7.0E-51	[1..198]	[1..198]
gi\|71361655 - gi\|71361655\|ref\|NP_001025071.1\| mitochondrial ribosomal protein L12 [Rattus norvegicus]	3.0E-50	[1..198]	[74..276]
RM12_CRICR - 39S ribosomal protein L12, mitochondrial OS=Cricetus cricetus GN=MRPL12 PE=2 SV=1	9.0E-42	[1..198]	[1..203]
gi\|50416673, gi\|... - gi\|55742214\|ref\|NP_001006886.1\| mitochondrial ribosomal protein L12 [Xenopus (Silurana) tropicalis],... gi\|55742214 - ref\|NP_001006886.1\| mitochondrial ribosomal protein L12 [Xenopus tropicalis]	2.0E-37	[16..198]	[9..189]

Back

Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPAAARPLW GPCLGLRAAA FRLARRQVPC VCAVRHMRSS GHQRCEALAG APLDNAPKEY  60
   61 PPKIQQLVQD IASLTLLEIS DLNELLKKTL KIQDVGLVPM GGVMSGAVPA AAAQEAVEED 120
  121 IPIAKERTHF TVRLTEAKPV DKVKLIKEIK NYIQGINLVQ AKKLVESLPQ EIKANVAKAE 180
  181 AEKIKAALEA VGGTVVLE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	2ftcE
Description:	No description for 2ftcE was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits