YRC Public Data Repository - Protein Structure Prediction

Protein:	NDFIP1
Organism:	Homo sapiens
Length:	221 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDFIP1.

Description	E-value	Query Range	Subject Range
NFIP1_MOUSE - NEDD4 family-interacting protein 1 OS=Mus musculus GN=Ndfip1 PE=1 SV=1	2.0E-93	[11..221]	[11..221]
gi\|22761723 - gi\|22761723\|dbj\|BAC11670.1\| unnamed protein product [Homo sapiens]	1.0E-92	[11..221]	[11..221]
NFIP1_RAT - NEDD4 family-interacting protein 1 OS=Rattus norvegicus GN=Ndfip1 PE=2 SV=1	2.0E-92	[11..221]	[11..221]
gi\|76623359, gi\|... - gi\|76623361\|ref\|XP_887072.1\| PREDICTED: similar to Nedd4 family interacting protein 1 isoform 7 [Bos...	4.0E-91	[11..221]	[11..221]
gi\|182891694, gi... - gi\|41054451\|ref\|NP_955960.1\| Nedd4 family interacting protein 1 [Danio rerio], gi\|27882287\|gb\|AAH444...	6.0E-91	[17..221]	[6..211]
gi\|50755218 - gi\|50755218\|ref\|XP_414658.1\| PREDICTED: similar to Nedd4 family interacting protein 1; Nedd4 WW doma...	2.0E-88	[18..221]	[106..309]
NFIP1_XENTR - NEDD4 family-interacting protein 1 OS=Xenopus tropicalis GN=ndfip1 PE=2 SV=1	9.0E-87	[15..221]	[5..211]
gi\|114602454 - gi\|114602454\|ref\|XP_001153016.1\| PREDICTED: similar to Nedd4 family interacting protein 1 isoform 1 ...	2.0E-86	[11..187]	[11..187]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALALAALAA VEPACGSRYQ QLQNEEESGE PEQAAGDAPP PYSSISAESA AYFDYKDESG  60
   61 FPKPPSYNVA TTLPSYDEAE RTKAEATIPL VPGRDEDFVG RDDFDDAD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [109-221]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLRIGNDGIF MLTFFMAFLF NWIGFFLSFC LTTSAAGRYG AISGFGLSLI KWILIVRFST  60
   61 YFPGYFDGQY WLWWVFLVLG FLLFLRGFIN YAKVRKMPET FSNLPRTRVL FIY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits