YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|13279332
Organism:	Homo sapiens
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|13279332.

Description	E-value	Query Range	Subject Range
gi\|49259570 - gi\|49259570\|pdb\|1VKB\|A Chain A, Crystal Structure Of A Protein With Unknown Function From Upf0131 Fa...	6.0E-50	[64..216]	[13..161]
GGACT_RAT - Gamma-glutamylaminecyclotransferase OS=Rattus norvegicus GN=Ggact PE=2 SV=1	3.0E-48	[64..216]	[1..149]
A2LD1 - AIG2-like domain 1	1.0E-47	[64..216]	[1..153]
GGACT_BOVIN - Gamma-glutamylaminecyclotransferase OS=Bos taurus GN=GGACT PE=2 SV=1	5.0E-42	[40..216]	[1..168]
gi\|50730609 - gi\|50730609\|ref\|XP_416969.1\| PREDICTED: hypothetical protein isoform 2 [Gallus gallus]	2.0E-41	[63..216]	[9..165]
gi\|73989450 - gi\|73989450\|ref\|XP_542653.2\| PREDICTED: similar to CG2811-PA [Canis familiaris]	4.0E-41	[57..216]	[57..219]
gi\|58381672, gi\|... - gi\|58381672\|ref\|XP_311399.2\| ENSANGP00000016842 [Anopheles gambiae str. PEST], gi\|55242888\|gb\|EAA070...	6.0E-40	[59..209]	[1..143]
gi\|66522157 - gi\|66522157\|ref\|XP_623476.1\| PREDICTED: similar to CG2811-PA isoform 2 [Apis mellifera]	6.0E-38	[59..214]	[35..192]

Back

Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPSRWSQDRC GESREAPLPS KTLEGETPEG VGAELRCVRL PGPEWNSVLK PGFSLQLDSS  60
   61 SARMALVFVY GTLKRGQPNH RVLRDGAHGS AAFRARGRTL EPYPLVIAGE HNIPWLLHLP 120
  121 GSGRLVEGEV YAVDERMLRF LDDFESCPAL YQRTVLRVQL LEDRAPGAEE PPAPTAVQCF 180
  181 VYSRATFPPE WAQLPHHDSY DSEGPHGLRY NPRENR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.39794
Match:	1vkbA
Description:	Crystal structure of hypothetical protein from Mus musculus at 1.90 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits