YRC Public Data Repository - Protein Structure Prediction

Protein:	CSTA
Organism:	Homo sapiens
Length:	98 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSTA.

Description	E-value	Query Range	Subject Range
gi\|30584379, gi\|... - gi\|61370525\|gb\|AAX43510.1\| cystatin B [synthetic construct], gi\|61370519\|gb\|AAX43509.1\| cystatin B [...	160.0	[0..1]	[98..1]
CYTB_PONPY - Cystatin-B OS=Pongo pygmaeus GN=CSTB PE=3 SV=1 gi\|23496472 - gi\|23496472\|dbj\|BAC20307.1\| cystatin B [Gorilla gorilla] CSTB - cystatin B (stefin B) CYTB_PANPA - Cystatin-B OS=Pan paniscus GN=CSTB PE=3 SV=1 gi\|123980040, gi... - gi\|61360774\|gb\|AAX41924.1\| cystatin B [synthetic construct], gi\|123994795\|gb\|ABM84999.1\| cystatin B ... CYTB_GORGO - Cystatin-B OS=Gorilla gorilla gorilla GN=CSTB PE=3 SV=1	160.0	[0..1]	[98..1]
CYTB_PIG - Cystatin-B OS=Sus scrofa GN=CSTB PE=1 SV=1	158.0	[0..1]	[98..1]
CYTB_PANTR - Cystatin-B OS=Pan troglodytes GN=CSTB PE=3 SV=1	158.0	[0..1]	[98..1]
gi\|127140962, gi... - gi\|94401232\|ref\|XP_998728.1\| PREDICTED: similar to cystatin A [Mus musculus], gi\|82965740\|ref\|XP_920...	158.0	[0..1]	[98..1]
gi\|76608397 - gi\|76608397\|ref\|XP_591975.2\| PREDICTED: similar to Cystatin B (Liver thiol proteinase inhibitor) (CP...	158.0	[0..4]	[98..134]
gi\|23821409 - gi\|23821409\|dbj\|BAC21008.1\| cystatin B [Macaca fuscata] gi\|109065176 - gi\|109065176\|ref\|XP_001104524.1\| PREDICTED: cystatin B (stefin B) [Macaca mulatta] CYTB_MACFU - Cystatin-B OS=Macaca fuscata fuscata GN=CSTB PE=3 SV=1	158.0	[0..1]	[98..1]
gi\|109494455 - gi\|109494455\|ref\|XP_001070786.1\| PREDICTED: similar to stefin A2 [Rattus norvegicus]	158.0	[0..4]	[98..10]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPGGLSEAK PATPEIQEIV DKVKPQLEEK TNETYGKLEA VQYKTQVVAG TNYYIKVRAG  60
   61 DNKYMHLKVF KSLPGQNEDL VLTGYQVDKN KDDELTGF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.69897
Match:	1cyuA
Description:	SOLUTION NMR STRUCTURE OF RECOMBINANT HUMAN CYSTATIN A UNDER THE CONDITION OF PH 3.8 AND 310K
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits