YRC Public Data Repository - Protein Structure Prediction

Protein:	CST1
Organism:	Homo sapiens
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CST1.

Description	E-value	Query Range	Subject Range
gi\|192912, gi\|109759 - gi\|192912\|gb\|AAA63298.1\| cystatin C, pir\|\|A36163 cystatin C precursor - mouse	160.0	[0..1]	[141..1]
gi\|109093125 - gi\|109093125\|ref\|XP_001097284.1\| PREDICTED: cystatin SA [Macaca mulatta]	160.0	[0..1]	[141..1]
gi\|55651412 - gi\|55651412\|ref\|XP_514555.1\| PREDICTED: similar to Cystatin SA precursor (Cystatin S5) isoform 3 [Pa...	157.0	[0..1]	[141..1]
gi\|18204598, gi\|... - gi\|19882251\|ref\|NP_001889.2\| cystatin SN precursor [Homo sapiens], gi\|18204598\|gb\|AAH21225.1\| Cystat...	154.0	[0..21]	[141..21]
gi\|58081 - gi\|58081\|emb\|CAA31253.1\| ompA - cystatin C fusion preprotein (AA -21 to 120) [synthetic construct]	151.0	[0..1]	[141..1]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQHLSTLLL LLATLAVALA WSPKEEDRII PGGIYNADLN DEWVQRALHF AISEYNKATK  60
   61 DDYYRRPLRV LRARQQTVGG VNYFFDVEVG RTICTKSQPN LDTCAFHEQP ELQKKQLCSF 120
  121 EIYEVPWENR RSLVKSRCQE S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.69897
Match:	1g96A
Description:	Cystatin C
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits