YRC Public Data Repository - Protein Structure Prediction

Protein:	C12orf44
Organism:	Homo sapiens
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C12orf44.

Description	E-value	Query Range	Subject Range
gi\|10433103 - gi\|10433103\|dbj\|BAB13907.1\| unnamed protein product [Homo sapiens]	9.0E-93	[1..218]	[1..218]
ATGA1_BOVIN - Autophagy-related protein 101 OS=Bos taurus GN=ATG101 PE=2 SV=1	3.0E-92	[1..218]	[1..218]
ATGA1_RAT - Autophagy-related protein 101 OS=Rattus norvegicus GN=Atg101 PE=2 SV=1	2.0E-91	[1..218]	[1..218]
ATGA1_MOUSE - Autophagy-related protein 101 OS=Mus musculus GN=Atg101 PE=1 SV=1	2.0E-91	[1..218]	[1..218]
gi\|166158094, gi... - gi\|166158094\|ref\|NP_001107455.1\| hypothetical protein LOC100135303 [Xenopus (Silurana) tropicalis], ... ATGA1_DANRE - Autophagy-related protein 101 OS=Danio rerio GN=atg101 PE=2 SV=1	1.0E-89	[1..218]	[1..218]
ATGA1_XENTR - Autophagy-related protein 101 OS=Xenopus tropicalis GN=atg101 PE=2 SV=1	2.0E-89	[1..218]	[1..218]
ATGA1_XENLA - Autophagy-related protein 101 OS=Xenopus laevis GN=atg101 PE=2 SV=1	2.0E-89	[1..218]	[1..218]
gi\|220943180 - gi\|220943180\|gb\|ACL84133.1\| CG7053-PA [synthetic construct] CG7053-PA - This gene is referred to in FlyBase by the symbol Dmel\CG7053 (CG7053, FBgn0030960). It is a protein...	5.0E-89	[1..218]	[1..218]
gi\|73996603 - gi\|73996603\|ref\|XP_543661.2\| PREDICTED: similar to CG7053-PA [Canis familiaris]	3.0E-87	[1..218]	[1..268]
gi\|125980714, gi... - gi\|54642688\|gb\|EAL31433.1\| GA20062-PA [Drosophila pseudoobscura], gi\|125980714\|ref\|XP_001354380.1\| G...	2.0E-86	[1..218]	[1..218]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNCRSEVLEV SVEGRQVEEA MLAVLHTVLL HRSTGKFHYK KEGTYSIGTV GTQDVDCDFI  60
   61 DFTYVRVSSE ELDRALRKVV GEFKDALRNS GGDGLGQMSL EFYQKKKSRW PFSDECIPWE 120
  121 VWTVKVHVVA LATEQERQIC REKVGEKLCE KIINIVEVMN RHEYLPKMPT QSEVDNVFDT 180
  181 GLRDVQPYLY KISFQITDAL GTSVTTTMRR LIKDTLAL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.11
Match:	1s2hA
Description:	The Mad2 spindle checkpoint protein possesses two distinct natively folded states
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits