YRC Public Data Repository - Protein Structure Prediction

Protein:	CENPK
Organism:	Homo sapiens
Length:	269 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CENPK.

Description	E-value	Query Range	Subject Range
gi\|148686550, gi... - gi\|148686550\|gb\|EDL18497.1\| centromere protein K, isoform CRA_c [Mus musculus], gi\|11140827\|ref\|NP_0...	0.0	[2..269]	[39..306]
gi\|109466012, gi... - gi\|109466012\|ref\|XP_001072494.1\| PREDICTED: similar to SoxLZ/Sox6 leucine zipper binding protein in ...	0.0	[2..269]	[57..320]
gi\|114600044, gi... - gi\|114600048\|ref\|XP_001164601.1\| PREDICTED: SoxLZ/Sox6 leucine zipper binding protein isoform 6 [Pan...	0.0	[1..269]	[1..269]
gi\|11141855 - gi\|11141855\|gb\|AAG31004.1\| leucine zipper protein FKSG14 [Homo sapiens]	0.0	[1..269]	[1..269]
gi\|109077398 - gi\|109077398\|ref\|XP_001084908.1\| PREDICTED: similar to SoxLZ/Sox6 leucine zipper binding protein [Ma...	0.0	[1..269]	[1..269]
gi\|194676375, gi... - gi\|76646308\|ref\|XP_582845.2\| PREDICTED: similar to SoxLZ/Sox6 leucine zipper binding protein [Bos ta...	0.0	[1..269]	[3..271]
gi\|73949966 - gi\|73949966\|ref\|XP_852116.1\| PREDICTED: similar to SoxLZ/Sox6 leucine zipper binding protein [Canis ...	0.0	[1..269]	[3..271]

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Predicted Domain #1

Region A:
Residues: [1-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQEDLDPDS TTDVGDVTNT EEELIRECEE MWKDMEECQN KLSLIGTETL TDSNAQLSLL  60
   61 IMQVKCLTAE LSQWQKKTPE TIPLTEDVLI TLGKEEFQKL RQDLEMVLST KESKNEKLKE 120
  121 DLEREQRWLD EQQQIMESLN VLHSELKNKV ETFSESRIFN ELKTKMLNIK EYKEKLLSTL 180
  181 GEFLEDHFPL PDRSVKKKKK NIQESSVNLI TLHEMLEILI NRLFDVPHDP YVKISDSFWP 240
  241 PYVELLLRNG IALRHPEDPT RIRLEAFHQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.93
Match:	2i1jA
Description:	No description for 2i1jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits