YRC Public Data Repository - Protein Structure Prediction

Protein:	C6orf153
Organism:	Homo sapiens
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C6orf153.

Description	E-value	Query Range	Subject Range
gi\|114607495 - gi\|114607495\|ref\|XP_001136227.1\| PREDICTED: similar to testis intracellular mediator protein isoform...	2.0E-85	[20..259]	[308..550]
gi\|109071199 - gi\|109071199\|ref\|XP_001091528.1\| PREDICTED: similar to testis intracellular mediator protein isoform...	9.0E-85	[20..259]	[308..550]
gi\|73972850 - gi\|73972850\|ref\|XP_852194.1\| PREDICTED: similar to kelch domain containing 3 (predicted) isoform 3 [...	2.0E-83	[20..259]	[308..550]
gi\|61554815 - gi\|61554815\|gb\|AAX46619.1\| testis intracellular mediator protein [Bos taurus]	2.0E-83	[20..259]	[308..550]
gi\|33989798 - gi\|33989798\|gb\|AAH06293.2\| C6orf153 protein [Homo sapiens]	2.0E-61	[1..259]	[7..259]
gi\|21450075, gi\|... - gi\|21450075\|ref\|NP_659106.1\| hypothetical protein LOC224823 [Mus musculus], gi\|15030015\|gb\|AAH11248....	2.0E-48	[32..259]	[2..226]
gi\|50738604 - gi\|50738604\|ref\|XP_419323.1\| PREDICTED: similar to CDNA sequence BC011248 [Gallus gallus]	2.0E-47	[94..255]	[460..621]
gi\|187038490, gi... - gi\|39588748\|emb\|CAE58272.1\| Hypothetical protein CBG01378 [Caenorhabditis briggsae], gi\|187038490\|em... gi\|157761737 - gi\|157761737\|ref\|XP_001673211.1\| Hypothetical protein CBG01378 [Caenorhabditis briggsae AF16]	1.0E-45	[16..255]	[217..466]

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Predicted Domain #1

Region A:
Residues: [1-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGANYRAGA GAGAGARRPR GARDREEDGG GLEPAAVARD LLRGTSNMSF EELLELQSQV  60
   61 GTKTYKQLVA GNSPKKQASR PPIQNACVAD KHRPLEMSAK IRVPFLRQVV PISKKVARDP 120
  121 RFDDLSGEYN PEVFDKTYQF LNDIRAKEKE LVKKQLKKHL SGEEHEKLQQ LLQRMEQQEM 180
  181 AQQERKQQQE LHLALKQERR AQAQQGHRPY FLKKSEQRQL ALAEKFKELK RSKKLENFLS 240
  241 RKRRRNAGKD RRHLPLSKE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.09
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits