YRC Public Data Repository - Protein Structure Prediction

Protein:	ACTL6B
Organism:	Homo sapiens
Length:	426 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ACTL6B.

Description	E-value	Query Range	Subject Range
gi\|109489498 - gi\|109489498\|ref\|XP_001076100.1\| PREDICTED: similar to Actin, cytoplasmic 2 (Gamma-actin) [Rattus no...	0.0	[9..425]	[312..683]
gi\|45269029 - gi\|45269029\|gb\|AAS55927.1\| cytoskeletal beta actin [Sus scrofa]	0.0	[8..425]	[31..403]
gi\|18565104 - gi\|18565104\|dbj\|BAB84579.1\| Actin 2 [Crassostrea gigas]	0.0	[7..425]	[2..375]
gi\|223855 - gi\|223855\|prf\|\|1002250A actin	0.0	[8..425]	[1..373]
gi\|224305 - gi\|224305\|prf\|\|1101351B actin	0.0	[8..425]	[1..373]
gi\|66549344, gi\|... - gi\|66549344\|ref\|XP_623381.1\| PREDICTED: similar to Actin-5C isoform 2 [Apis mellifera], gi\|48137684\|...	0.0	[7..425]	[2..375]
gi\|109729854 - gi\|109729854\|gb\|ABG46341.1\| actin [Aedes albopictus]	0.0	[8..425]	[3..375]
gi\|29293659 - gi\|29293659\|gb\|AAO67718.1\| beta actin [Engystomops pustulosus]	0.0	[8..425]	[4..376]

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Predicted Domain #1

Region A:
Residues: [1-426]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGVYGGDE VGALVFDIGS FSVRAGYAGE DCPKADFPTT VGLLAAEEGG GLELEGDKEK  60
   61 KGKIFHIDTN ALHVPRDGAE VMSPLKNGMI EDWECFRAIL DHTYSKHVKS EPNLHPVLMS 120
  121 EAPWNTRAKR EKLTELMFEQ YNIPAFFLCK TAVLTAFANG RSTGLVLDSG ATHTTAIPVH 180
  181 DGYVLQQGIV KSPLAGDFIS MQCRELFQEM AIDIIPPYMI AAKEPVREGA PPNWKKKEKL 240
  241 PQVSKSWHNY MCNEVIQDFQ ASVLQVSDSP YDEQVAAQMP TVHYEMPNGY NTDYGAERLR 300
  301 IPEGLFDPSN VKGLSGNTML GVGHVVTTSI GMCDIDIRPG LYGSVIVTGG NTLLQGFTDR 360
  361 LNRELSQKTP PSMRLKLIAS NSTMERKFSP WIGGSILASL GTFQQMWISK QEYEEGGKQC 420
  421 VERKCP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	156.0
Match:	1hluA
Description:	Actin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits