YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|119586562, gi...
Organism:	Homo sapiens
Length:	156 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|119586562, gi....

Description	E-value	Query Range	Subject Range
CKLF5_MOUSE - CKLF-like MARVEL transmembrane domain-containing protein 5 OS=Mus musculus GN=Cmtm5 PE=1 SV=1	2.0E-35	[1..156]	[1..156]
gi\|115495609, gi... - gi\|76626948\|ref\|XP_587252.2\| PREDICTED: similar to chemokine-like factor superfamily 5 [Bos taurus],...	6.0E-35	[1..156]	[1..156]
gi\|149063937, gi... - gi\|27700030\|ref\|XP_214187.1\| PREDICTED: similar to chemokine-like factor superfamily 5 [Rattus norve...	1.0E-34	[1..156]	[1..156]
gi\|73962633 - gi\|73962633\|ref\|XP_850232.1\| PREDICTED: similar to chemokine-like factor superfamily 5 isoform a [Ca...	7.0E-34	[1..156]	[1..156]
PLP2 - proteolipid protein 2 (colonic epithelium-enriched)	4.0E-31	[16..151]	[8..142]
PLP2_RABIT - Proteolipid protein 2 OS=Oryctolagus cuniculus GN=PLP2 PE=2 SV=1	1.0E-30	[16..151]	[8..142]
gi\|109130707, gi... - gi\|109130707\|ref\|XP_001106080.1\| PREDICTED: proteolipid protein 2 (colonic epithelium-enriched) isof...	2.0E-30	[16..151]	[8..142]
gi\|114662992 - gi\|114662992\|ref\|XP_523385.2\| PREDICTED: chemokine-like factor superfamily 4 isoform 2 [Pan troglody...	2.0E-30	[10..146]	[24..176]

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Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSARDRRDR HPEEGVVAEL QGFAVDKAFL TSHKGILLET ELALTLIIFI CFTASISAYM  60
   61 AAALLEFFIT LAFLFLYATQ YYQRFDRINW PCLDFLRCVS AIIIFLVVSF AAVTSRDGAA 120
  121 IAAFVFGIIL VSIFAYDAFK IYRTEMAPGA SQGDQQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	19.657577
Match:	PF01284.14
Description:	No description for PF01284.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits