| Protein: | gi|12697967 |
| Organism: | Homo sapiens |
| Length: | 1090 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12697967.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..1090] | [406..1494] |
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0.0 | [1..1090] | [406..1494] |
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0.0 | [1..1090] | [406..1490] |
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0.0 | [1..1090] | [406..1495] |
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0.0 | [1..1090] | [406..1491] |
|
Region A: Residues: [1-245] |
1 11 21 31 41 51
| | | | | |
1 LCKVSAGNEN ACLTTKHLTA LGKLEPKLVP LVIAFRYWAK LCSIDRPEEG GLPPYVFALM 60
61 AIFFLQQRKE PLLPVYLGSW IEGFSLSKLG NFNLQDIEKD VVIWEHTDSA AGDTGITKEE 120
121 APRETPIKRG QVSLILDVKH QPSVPVGQLW VELLRFYALE FNLADLVISI RVKELVSREL 180
181 KDWPKKRIAI EDPYSVKRNV ARTLNSQPVF EYILHCLRTT YKYFALPHKI TKSSLLKPLN 240
241 AITCI
|
| Detection Method: |  |
| Confidence: | 5.26 |
| Match: | 2b4vA |
| Description: | Structural Basis for UTP Specificity of RNA Editing TUTases From Trypanosoma Brucei |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [246-333] |
1 11 21 31 41 51
| | | | | |
1 SEHSKEVINH HPDVQTKDDK LKNSVLAQGP GATSSAANTC KVQPLTLKET AESFGSPPKE 60
61 EMGNEHISVH PENSDCIQAD VNSDDYKG
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.432 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.324 | a.118.1 | ARM repeat |
| View | Download | 0.321 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.314 | a.1.1 | Globin-like |
| View | Download | 0.281 | d.58.7 | RNA-binding domain, RBD |
|
Region A: Residues: [334-533] |
1 11 21 31 41 51
| | | | | |
1 DKVYHPETGR KNEKEKVGRK GKHLLTVDQK RGEHVVCGST RNNESESTLD LEGFQNPTAK 60
61 ECEGLATLDN KADLDGESTE GTEELEDSLN HFTHSVQGQT SEMIPSDEEE EDDEEEEEEE 120
121 EPRLTINQRE DEDGMANEDE LDNTYTGSGD EDALSEEDDE LGEAAKYEDV KECGKHVERA 180
181 LLVELNKISL KEENVCEEKN
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [534-929] |
1 11 21 31 41 51
| | | | | |
1 SPVDQSDFFY EFSKLIFTKG KSPTVVCSLC KREGHLKKDC PEDFKRIQLE PLPPLTPKFL 60
61 NILDQVCIQC YKDFSPTIIE DQAREHIRQN LESFIRQDFP GTKLSLFGSS KNGFGFKQSD 120
121 LDVCMTINGL ETAEGLDCVR TIEELARVLR KHSGLRNILP ITTAKVPIVK FFHLRSGLEV 180
181 DISLYNTLAL HNTRLLSAYS AIDPRVKYLC YTMKVFTKMC DIGDASRGSL SSYAYTLMVL 240
241 YFLQQRNPPV IPVLQEIYKG EKKPEIFVDG WNIYFFDQID ELPTYWSECG KNTESVGQLW 300
301 LGLLRFYTEE FDFKEHVISI RRKSLLTTFK KQWTSKYIVI EDPFDLNHNL GAGLSRKMTN 360
361 FIMKAFINGR RVFGIPVKGF PKDYPSKMEY FFDPDV
|
| Detection Method: | |
| Confidence: | 64.522879 |
| Match: | 1f5aA |
| Description: | Poly(A) polymerase, middle domain; Poly(A) polymerase N-terminal, catalytic domain; Poly(A) polymerase, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleotidyltransferase activity | 3.12632133477736 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 2.03741071977036 | bayes_pls_golite062009 |
| nucleic acid binding | 1.35958790110182 | bayes_pls_golite062009 |
| RNA binding | 1.26469116227089 | bayes_pls_golite062009 |
| transferase activity | 1.1355378442847 | bayes_pls_golite062009 |
| DNA polymerase activity | 0.920730104361505 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 0.913497340211638 | bayes_pls_golite062009 |
| binding | 0.841038039546473 | bayes_pls_golite062009 |
| DNA binding | 0.782730432596522 | bayes_pls_golite062009 |
| catalytic activity | 0.75232920999699 | bayes_pls_golite062009 |
| polynucleotide adenylyltransferase activity | 0.747086661208511 | bayes_pls_golite062009 |
| protein binding | 0.117945573723438 | bayes_pls_golite062009 |
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Region A: Residues: [930-1090] |
1 11 21 31 41 51
| | | | | |
1 LTEGELAPND RCCRICGKIG HFMKDCPMRR KVRRRRDQED ALNQRYPENK EKRSKEDKEI 60
61 HNKYTEREVS TKEDKPIQCT PQKAKPMRAA ADLGREKILR PPVEKWKRQD DKDLREKRCF 120
121 ICGREGHIKK ECPQFKGSSG SLSSKYMTQG KASAKRTQQE S
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
