YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21361809, gi\|...
Organism:	Homo sapiens
Length:	390 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21361809, gi|....

Description	E-value	Query Range	Subject Range
gi\|73990618 - gi\|73990618\|ref\|XP_853786.1\| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G (hnRNP ...	8.0E-41	[1..303]	[120..422]
RBMX_RAT - RNA-binding motif protein, X chromosome OS=Rattus norvegicus GN=Rbmx PE=1 SV=1	9.0E-33	[1..366]	[1..367]
gi\|76658699, gi\|... - gi\|76658701\|ref\|XP_881201.1\| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G (hnRNP ...	1.0E-30	[1..366]	[1..367]
RBMX_MACFA - RNA-binding motif protein, X chromosome OS=Macaca fascicularis GN=RBMX PE=2 SV=1	1.0E-30	[1..366]	[1..367]
RBMX - RNA binding motif protein, X-linked gi\|74008547, gi\|... - gi\|74008547\|ref\|XP_866434.1\| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G (hnRNP ... gi\|124000061, gi... - gi\|124000061\|gb\|ABM87539.1\| RNA binding motif protein, X-linked [synthetic construct], gi\|123993071\|... tr\|M3W2U4\|M3W2U4... - RNA binding motif protein, X-linked OS=Felis catus GN=RBMX PE=4 SV=1 RBMX_PANTR - RNA-binding motif protein, X chromosome OS=Pan troglodytes GN=RBMX PE=2 SV=1 gi\|146741480 - gi\|146741480\|dbj\|BAF62396.1\| RNA binding motif protein, X-linked [Pan troglodytes verus] gi\|149755726 - gi\|149755726\|ref\|XP_001489601.1\| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G (hn...	1.0E-30	[1..366]	[1..367]
RBMX_MOUSE - RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx PE=1 SV=1	2.0E-30	[1..366]	[1..367]

Back

Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEADRPGKL FIGGLNTETN EKALETVFGK YGRIVEVLLI KDRETNKSRG FAFVTFESPA  60
   61 DAKDAARDMN GKSLDGKAIK VEQATKPSFE RGRHGPPPPP RSRGPPRGFG AGRGGSGGTR 120
  121 GPPSRGGHMD DGGYSMNFN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.221849
Match:	2fy1A
Description:	No description for 2fy1A was found.

Predicted Domain #2

Region A:
Residues: [140-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSRGPLPV KRGPPPRSGG PSPKRSAPSG LVRSSSGMGG RAPLSRGRDS YGGPPRREPL  60
   61 PSRRDVYLSP RDDGYSTKDS YSSRDYP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [227-390]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSRDTRDYAP PPRDYTYRDY GHSSSRDDYP SRGYGDRDGY GRDRDYSDHP SGGSYRDSYE  60
   61 SYGNSRSAPL TRGPPPSYGG SSRYDDYSSS RDGYGGSRDS YSSSRSDLYS SCDRVGRQER 120
  121 GLPPSVERGY PSSRDSYSSS SRGAPRGAGP GGSRSDRGGG RSRY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits