YRC Public Data Repository - Protein Structure Prediction

Protein:	NCAPG
Organism:	Homo sapiens
Length:	1015 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NCAPG.

Description	E-value	Query Range	Subject Range
gi\|114593298 - gi\|114593298\|ref\|XP_526535.2\| PREDICTED: chromosome condensation protein G isoform 2 [Pan troglodyte...	0.0	[1..1015]	[1..1017]
gi\|10433942 - gi\|10433942\|dbj\|BAB14069.1\| unnamed protein product [Homo sapiens]	0.0	[1..1015]	[1..1015]
gi\|109073817 - gi\|109073817\|ref\|XP_001102882.1\| PREDICTED: similar to chromosome condensation protein G [Macaca mul...	0.0	[1..1015]	[1..1024]
gi\|109500710, gi... - gi\|109500710\|ref\|XP_001058724.1\| PREDICTED: similar to chromosome condensation protein G [Rattus nor...	0.0	[1..1015]	[1..1003]
gi\|38649018, gi\|... - gi\|49898924\|gb\|AAH76656.1\| Chromosome condensation protein G [Xenopus tropicalis], gi\|45361225\|ref\|N...	0.0	[1..1013]	[1..1039]
gi\|82896780, gi\|... - gi\|82896780\|ref\|XP_485604.3\| PREDICTED: similar to condensin subunit CAP-G isoform 1 [Mus musculus],...	0.0	[1..1015]	[1..1004]

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Predicted Domain #1

Region A:
Residues: [1-752]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAERRLLSI KEAFRLAQQP HQNQAKLVVA LSRTYRTMDD KTVFHEEFIH YLKYVMVVYK  60
   61 REPAVERVIE FAAKFVTSFH QSDMEDDEEE EDGGLLNYLF TFLLKSHEAN SNAVRFRVCL 120
  121 LINKLLGSMP ENAQIDDDVF DKINKAMLIR LKDKIPNVRI QAVLALSRLQ DPKDDECPVV 180
  181 NAYATLIEND SNPEVRRAVL SCIAPSAKTL PKIVGRTKDV KEAVRKLAYQ VLAEKVHMRA 240
  241 MSIAQRVMLL QQGLNDRSDA VKQAMQKHLL QGWLRFSEGN ILELLHRLDV ENSSEVAVSV 300
  301 LNALFSITPL SELVGLCKNN DGRKLIPVET LTPEIALYWC ALCEYLKSKG DEGEEFLEQI 360
  361 LPEPVVYADY LLSYIQSIPV VNEEHRGDFS YIGNLMTKEF IGQQLILIIK SLDTSEEGGR 420
  421 KKLLAVLQEI LILPTIPISL VSFLVERLLH IIIDDNKRTQ IVTEIISEIR APIVTVGVNN 480
  481 DPADVRKKEL KMAEIKVKLI EAKEALENCI TLQDFNRASE LKEEIKALED ARINLLKETE 540
  541 QLEIKEVHIE KNDAETLQKC LILCYELLKQ MSISTGLSAT MNGIIESLIL PGIISIHPVV 600
  601 RNLAVLCLGC CGLQNQDFAR KHFVLLLQVL QIDDVTIKIS ALKAIFDQLM TFGIEPFKTK 660
  661 KIKTLHCEGT EINSDDEQES KEVEETATAK NVLKLLSDFL DSEVSELRTG AAEGLAKLMF 720
  721 SGLLVSSRIL SRLILLWYNP VTEEDVQLRH CL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.69897
Match:	2h4mA
Description:	No description for 2h4mA was found.

Predicted Domain #2

Region A:
Residues: [753-946]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVFFPVFAYA SRTNQECFEE AFLPTLQTLA NAPASSPLAE IDITNVAELL VDLTRPSGLN  60
   61 PQAKTSQDYQ ALTVHDNLAM KICNEILTSP CSPEIRVYTK ALSSLELSSH LAKDLLVLLN 120
  121 EILEQVKDRT CLRALEKIKI QLEKGNKEFG DQAEAAQDAT LTTTTFQNED EKNKEVYMTP 180
  181 LRGVKATQAS KSTQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [947-1015]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKTNRGQRKV TVSARTNRRC QTAEADSESD HEVPEPESEM KMRLPRRAKT AALEKSKLNL  60
   61 AQFLNEDLS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits