YRC Public Data Repository - Protein Structure Prediction

Protein:	ELOVL4
Organism:	Homo sapiens
Length:	314 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ELOVL4.

Description	E-value	Query Range	Subject Range
gi\|76672739 - gi\|76672739\|ref\|XP_610522.2\| PREDICTED: similar to elongation of very long chain fatty acids (FEN1/E...	0.0	[8..314]	[428..734]
sp\|Q9GZR5-1\|ELOV... - Elongation of very long chain fatty acids protein 4 OS=Homo sapiens GN=ELOVL4 PE=1 SV=1 VAR_012492, ... gi\|114608211 - gi\|114608211\|ref\|XP_518601.2\| PREDICTED: elongation of very long chain fatty acids (FEN1/Elo2, SUR4/...	0.0	[1..314]	[1..314]
gi\|57095098 - gi\|57095098\|ref\|XP_539015.1\| PREDICTED: similar to elongation of very long chain fatty acids (FEN1/E...	0.0	[1..314]	[1..314]
gi\|34865533, gi\|... - gi\|34865533\|ref\|XP_236476.2\| PREDICTED: similar to Elongation of very long chain fatty acids protein...	0.0	[1..314]	[1..314]
gi\|23620503 - gi\|23620503\|gb\|AAH38506.1\| Elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-l... gi\|123980652 - gi\|123980652\|gb\|ABM82155.1\| elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-...	0.0	[1..314]	[1..314]
ELOV4_MACMU - Elongation of very long chain fatty acids protein 4 OS=Macaca mulatta GN=ELOVL4 PE=3 SV=1 ELOV4_MACFA - Elongation of very long chain fatty acids protein 4 OS=Macaca fascicularis GN=ELOVL4 PE=2 SV=1	0.0	[1..314]	[1..314]
ELO4_MOUSE, ELOV... - Elongation of very long chain fatty acids protein 4 OS=Mus musculus GN=Elovl4 PE=2 SV=1, (Q9EQC4) El...	3.0E-98	[1..314]	[1..312]
gi\|50744984 - gi\|50744984\|ref\|XP_426204.1\| PREDICTED: similar to fatty acid elongase 1 [Gallus gallus]	2.0E-88	[15..306]	[546..834]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLDSEPGS VLNVVSTALN DTVEFYRWTW SIADKRVENW PLMQSPWPTL SISTLYLLFV  60
   61 WLGPKWMKDR EPFQMRLVLI IYNFGMVLLN LFIFRELFMG SYNAGYSYIC QSVDYSNNVH 120
  121 EVRIAAALWW YFVSKGVEYL DTVFFILRKK NNQVSFLHVY HHCTMFTLWW IGI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [174-314]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KWVAGGQAFF GAQLNSFIHV IMYSYYGLTA FGPWIQKYLW WKRYLTMLQL IQFHVTIGHT  60
   61 ALSLYTDCPF PKWMHWALIA YAISFIFLFL NFYIRTYKEP KKPKAGKTAM NGISANGVSK 120
  121 SEKQLMIENG KKQKNGKAKG D

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits