YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|41190374, gi\|...
Organism:	Homo sapiens
Length:	317 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|41190374, gi|....

Description	E-value	Query Range	Subject Range
gi\|27503344, gi\|... - gi\|27503344\|gb\|AAH42268.1\| Arbp-prov protein [Xenopus laevis], gi\|147904649\|ref\|NP_001080134.1\| acid...	0.0	[1..317]	[1..315]
gi\|45360787, gi\|... - gi\|45360787\|ref\|NP_989067.1\| acidic ribosomal phosphoprotein P0 [Xenopus (Silurana) tropicalis], gi\|...	0.0	[1..317]	[1..314]
gi\|149720539, gi... - gi\|149720543\|ref\|XP_001489380.1\| PREDICTED: similar to ribosomal phosphoprotein large PO subunit iso... tr\|M3WIQ1\|M3WIQ1... - 60S acidic ribosomal protein P0 OS=Felis catus GN=RPLP0 PE=3 SV=1 gi\|73994687, gi\|... - gi\|74003925\|ref\|XP_858251.1\| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform 7 ...	0.0	[1..317]	[1..317]
gi\|114577027 - gi\|114577027\|ref\|XP_001168269.1\| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isofor...	0.0	[1..317]	[1..317]
gi\|187609305 - gi\|187609305\|pdb\|2ZKR\|GG Chain g, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Compl... RPLP0 - ribosomal protein, large, P0 gi\|208967340, gi... - gi\|208967340\|dbj\|BAG73684.1\| ribosomal protein, large, P0 [synthetic construct], gi\|123996641\|gb\|ABM... gi\|55639049 - gi\|55639049\|ref\|XP_509423.1\| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) [Pan trogl...	0.0	[1..317]	[1..317]
RLA0_RANSY - 60S acidic ribosomal protein P0 OS=Rana sylvatica GN=RPLP0 PE=2 SV=1	0.0	[1..275]	[1..275]
RLA0_BOVIN - 60S acidic ribosomal protein P0 OS=Bos taurus GN=RPLP0 PE=2 SV=3	0.0	[1..317]	[1..318]

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Predicted Domain #1

Region A:
Residues: [1-317]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPREDRATWK SNYFLKIIQL LDDYPKCFIV GADNVGSKQM QQIRMSLRGK VVVLMGKNTM  60
   61 MRKAIRGHLE NNPALEKLLP HIWGNVGFVF TKEDLTEIRD MLLANKVPAA ARAGAIAPCE 120
  121 VTVPAQNTGL GPEKTSFFQA LGITTKISRG TIEILSDVQL IKTGDKVGAS EATLLNMLNI 180
  181 SPFSFGLVIQ QVFDNGSIYN PEVLDKTEET LHSRFLEGVR NVASVCLQTG YPTVASVPHS 240
  241 IINGYKRVLA LSVETDYTFP LAENVKAFLA DPSAFVAAAP VAADTTAAPA AAAAPAKVEA 300
  301 KEESEESDED MGFGLFD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.154902
Match:	1jj2G
Description:	Ribosomal protein L10
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits