YRC Public Data Repository - Protein Structure Prediction

Protein:	SVIP
Organism:	Homo sapiens
Length:	77 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SVIP.

Description	E-value	Query Range	Subject Range
SVIP_MOUSE - Small VCP/p97-interacting protein OS=Mus musculus GN=Svip PE=3 SV=1	96.0	[0..1]	[77..1]
gi\|114636608 - gi\|114636608\|ref\|XP_529396.2\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] gi\|89033827, gi\|... - gi\|89034517\|ref\|XP_950688.1\| PREDICTED: similar to Small VCP/p97-interacting protein isoform 5 [Homo...	91.0	[0..1]	[75..1]
SVIP_RAT - Small VCP/p97-interacting protein OS=Rattus norvegicus GN=Svip PE=1 SV=1	90.0	[0..1]	[77..1]
gi\|76162454 - gi\|76162454\|gb\|AAX30289.2\| SJCHGC02765 protein [Schistosoma japonicum]	85.0	[0..17]	[77..27]
gi\|157012896, gi... - gi\|58396432\|ref\|XP_321891.2\| ENSANGP00000013901 [Anopheles gambiae str. PEST], gi\|55234084\|gb\|EAA017...	83.0	[0..19]	[75..233]
gi\|115970631, gi... - gi\|115970631\|ref\|XP_001177020.1\| PREDICTED: similar to conserved hypothetical protein [Strongylocent...	79.0	[0..1]	[77..1]
gi\|47220502 - gi\|47220502\|emb\|CAG05528.1\| unnamed protein product [Tetraodon nigroviridis]	78.0	[0..1]	[73..1]
gi\|108878667, gi... - gi\|157110515\|ref\|XP_001651135.1\| hypothetical protein AaeL_AAEL005601 [Aedes aegypti], gi\|108878667\|...	74.0	[0..1]	[75..1]
CG32039-PA, FBpp... - This gene is referred to in FlyBase by the symbol Dmel\CG32039 (CG32039, FBgn0052039). It is a prote...	70.0	[0..1]	[77..1]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLCFPCPGE SAPPTPDLEE KRAKLAEAAE RRQKEAASRG ILDVQSVQEK RKKKEKIEKQ  60
   61 IATSGPPPEG GLRWTVS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits