YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|98961607, gi\|...
Organism:	Arabidopsis thaliana
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|98961607, gi|....

Description	E-value	Query Range	Subject Range
LEU3_AQUAE - 3-isopropylmalate dehydrogenase OS=Aquifex aeolicus (strain VF5) GN=leuB PE=3 SV=1 LEU3_AQUAE - 3-isopropylmalate dehydrogenase OS=Aquifex aeolicus GN=leuB PE=3 SV=1	125.0	[0..38]	[130..1]
LEU31_ARATH, LE3... - 3-isopropylmalate dehydrogenase 1, chloroplast precursor (EC 1.1.1.85) (Beta-IPM dehydrogenase 1) (I...	125.0	[0..1]	[130..1]
LEU3_BRANA - 3-isopropylmalate dehydrogenase, chloroplastic OS=Brassica napus PE=2 SV=1	123.0	[0..1]	[130..1]
LEU3_GEOKA - 3-isopropylmalate dehydrogenase OS=Geobacillus kaustophilus (strain HTA426) GN=leuB PE=3 SV=1 LEU3_GEOKA - 3-isopropylmalate dehydrogenase OS=Geobacillus kaustophilus GN=leuB PE=3 SV=1	121.0	[0..38]	[130..1]
gi\|149747566, gi... - gi\|153839177\|ref\|ZP_01991844.1\| 3-isopropylmalate dehydrogenase [Vibrio parahaemolyticus AQ3810], gi... LEU3_VIBPA - 3-isopropylmalate dehydrogenase OS=Vibrio parahaemolyticus GN=leuB PE=3 SV=1 LEU3_VIBPA - 3-isopropylmalate dehydrogenase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=l...	121.0	[0..36]	[130..1]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGVIHVSST QIPVAFMSAT KQSFRRASVI RCAANTPKKR YTIAVLPGDG VGNEVIPVAV  60
   61 DVLCLAGSLE GIDFSFEELP IGGVALDLVG VPLPKETLIR AKQSDALLLG AVGWYGIITI 120
  121 TFVHLKFGFI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.39794
Match:	2ayqA
Description:	3-isopropylmalate dehydrogenase, IPMDH
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits