YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|186478048, gi...
Organism:	Arabidopsis thaliana
Length:	332 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|186478048, gi....

Description	E-value	Query Range	Subject Range
gi\|220948018 - gi\|220948018\|gb\|ACL86552.1\| CG8412-PA [synthetic construct] CG8412-PA - This gene is referred to in FlyBase by the symbol Dmel\CG8412 (CG8412, FBgn0037743). It is a protein...	236.0	[0..1]	[291..30]
gi\|73968861 - gi\|73968861\|ref\|XP_856087.1\| PREDICTED: similar to alpha-1,6-mannosyltransferase ALG12 isoform 3 [Ca...	228.0	[0..1]	[322..44]
gi\|40746215, gi\|... - gi\|67516895\|ref\|XP_658333.1\| hypothetical protein AN0729.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	226.0	[0..3]	[308..67]
gi\|91094203 - gi\|91094203\|ref\|XP_971608.1\| PREDICTED: similar to glycosyltransferase [Tribolium castaneum]	226.0	[0..1]	[327..30]
gi\|54638331, gi\|... - gi\|54638331\|gb\|EAL27733.1\| GA21058-PA [Drosophila pseudoobscura], gi\|125774667\|ref\|XP_001358592.1\| G...	226.0	[0..1]	[291..30]
gi\|39969013, gi\|... - gi\|39969013\|ref\|XP_365897.1\| hypothetical protein MG10117.4 [Magnaporthe grisea 70-15], gb\|EAA49953....	219.0	[0..3]	[309..67]
gi\|22266724 - gi\|22266724\|gb\|AAM94900.1\|AF311904_1 membrane protein SB87 precursor [Homo sapiens]	218.0	[0..2]	[291..43]
gi\|18204717, gi\|... - gi\|21703942\|ref\|NP_663452.1\| alpha-1,6-mannosyltransferase ALG12 [Mus musculus], gi\|18204717\|gb\|AAH2...	217.0	[0..2]	[322..44]
gi\|109108612 - gi\|109108612\|ref\|XP_001106108.1\| PREDICTED: disrupted in bipolar disorder 1 isoform 2 [Macaca mulatt...	217.0	[0..3]	[298..92]
gi\|159131511 - gi\|159131511\|gb\|EDP56624.1\| alpha-1,2-mannosyltransferase (Alg9), putative [Aspergillus fumigatus A1... gi\|70996004, gi\|... - gi\|70996004\|ref\|XP_752757.1\| alpha-1,2-mannosyltransferase (Alg9) [Aspergillus fumigatus Af293], gi\|...	216.0	[0..2]	[308..100]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHDILYHRHH LDSYDHLEFP GVVPRTFIGA FIVSVFASPV VSIISCLGFP KVYSLVAARL  60
   61 VLGCIILSTL RFFRIQIKKK FGNQVETFFV LFTSLQFHFL FYCTRPLPNI LALGLVNLAY 120
  121 GNWLK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [126-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNFYPALSFL IFATVIFRCD TMLLLGPIGL ELLLTKSISF WKALKYCVGT ALLAVGLTIF  60
   61 VDSIMWKKFV WPEFEVFWFN SILNRSSDWG RLHQIGHPAN VAGEEWVHID TFGAMNGISR 120
  121 FCEDDFPWRY SKEEEIVVEE LRNRNFTYLV NEHSSVDGYK CLFYEEGFER LELRRGFPPI 180
  181 VLVKKAKVYL HREMKKEDPF HKKWPGC

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits