YRC Public Data Repository - Protein Structure Prediction

Protein:	PIGA
Organism:	Homo sapiens
Length:	484 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PIGA.

Description	E-value	Query Range	Subject Range
gi\|114687855 - gi\|114687855\|ref\|XP_520945.2\| PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subuni...	0.0	[1..484]	[1..484]
gi\|109129987 - gi\|109129987\|ref\|XP_001100879.1\| PREDICTED: similar to phosphatidylinositol N-acetylglucosaminyltran...	0.0	[1..484]	[1..484]
gi\|74145418 - gi\|74145418\|dbj\|BAE36154.1\| unnamed protein product [Mus musculus]	0.0	[1..484]	[1..485]
gi\|34880068, gi\|... - gi\|34880068\|ref\|XP_343784.1\| PREDICTED: similar to N-acetylglucosaminyl-phosphatidylinositol biosynt...	0.0	[1..484]	[1..485]
gi\|76668158 - gi\|76668158\|ref\|XP_870018.1\| PREDICTED: similar to phosphatidylinositol N-acetylglucosaminyltransfer...	0.0	[1..484]	[1..485]
gi\|57111901 - gi\|57111901\|ref\|XP_548868.1\| PREDICTED: similar to phosphatidylinositol N-acetylglucosaminyltransfer...	0.0	[1..484]	[1..485]
gi\|46108156, gi\|... - gi\|46108156\|ref\|XP_381136.1\| hypothetical protein FG00960.1 [Gibberella zeae PH-1], gi\|42546668\|gb\|E...	4.0E-94	[29..484]	[2..495]
gi\|39943844, gi\|... - gi\|39943844\|ref\|XP_361459.1\| hypothetical protein MGG_03933 [Magnaporthe grisea 70-15], gb\|EAA50174....	1.0E-93	[30..484]	[2..487]

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Predicted Domain #1

Region A:
Residues: [1-406]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACRGGAGNG HRASATLSRV SPGSLYTCRT RTHNICMVSD FFYPNMGGVE SHIYQLSQCL  60
   61 IERGHKVIIV THAYGNRKGI RYLTSGLKVY YLPLKVMYNQ STATTLFHSL PLLRYIFVRE 120
  121 RVTIIHSHSS FSAMAHDALF HAKTMGLQTV FTDHSLFGFA DVSSVLTNKL LTVSLCDTNH 180
  181 IICVSYTSKE NTVLRAALNP EIVSVIPNAV DPTDFTPDPF RRHDSITIVV VSRLVYRKGI 240
  241 DLLSGIIPEL CQKYPDLNFI IGGEGPKRII LEEVRERYQL HDRVRLLGAL EHKDVRNVLV 300
  301 QGHIFLNTSL TEAFCMAIVE AASCGLQVVS TRVGGIPEVL PENLIILCEP SVKSLCEGLE 360
  361 KAIFQLKSGT LPAPENIHNI VKTFYTWRNV AERTEKVYDR VSVEAV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.0
Match:	2gejA
Description:	No description for 2gejA was found.

Predicted Domain #2

Region A:
Residues: [407-484]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPMDKRLDRL ISHCGPVTGY IFALLAVFNF LFLIFLRWMT PDSIIDVAID ATGPRGAWTN  60
   61 NYSHSKRGGE NNEISETR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits