YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUFB9
Organism:	Homo sapiens
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUFB9.

Description	E-value	Query Range	Subject Range
NDUB9_MOUSE - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Mus musculus GN=Ndufb9 PE=1 SV=3	3.0E-80	[1..178]	[1..178]
NDUB9_BOVIN - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Bos taurus GN=NDUFB9 PE=1 SV=2	2.0E-79	[1..179]	[1..179]
gi\|187469746, gi... - gi\|197245756\|gb\|AAI68767.1\| NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 [Rattus norvegicus]...	4.0E-79	[1..178]	[1..178]
NDUB9_PONAB - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pongo abelii GN=NDUFB9 PE=2 SV=3 NDUB9_PONPY - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 - Pongo pygmaeus (Orangutan)	1.0E-78	[1..179]	[1..179]
gi\|4894370 - gi\|4894370\|gb\|AAD32452.1\|AF067168_1 NADH-ubiquinone oxidoreductase B22 subunit homolog [Homo sapiens...	1.0E-78	[1..179]	[1..179]
gi\|57095338 - gi\|57095338\|ref\|XP_532326.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex...	1.0E-78	[1..179]	[1..179]
NDUB9_PANTR - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pan troglodytes GN=NDUFB9 PE=2 SV=3	3.0E-78	[1..179]	[1..179]
NDUB9_GORGO - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Gorilla gorilla gorilla GN=NDUFB9 PE=... gi\|111662023 - gi\|111662023\|gb\|ABH12194.1\| mitochondrial complex I subunit NDUFB9 [Gorilla gorilla]	3.0E-78	[1..179]	[1..179]
gi\|50731984 - gi\|50731984\|ref\|XP_418444.1\| PREDICTED: similar to NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) cha...	3.0E-69	[7..179]	[2..174]
gi\|62955727, gi\|... - gi\|68382570\|ref\|XP_689133.1\| PREDICTED: hypothetical protein [Danio rerio], gi\|62955727\|ref\|NP_00101...	3.0E-69	[7..179]	[3..175]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFLASGPYL THQQKVLRLY KRALRHLESW CVQRDKYRYF ACLMRARFEE HKNEKDMAKA  60
   61 TQLLKEAEEE FWYRQHPQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	24.346787
Match:	PF05347.6
Description:	No description for PF05347.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.822	0.008	mitochondrial electron transport, NADH to ubiquinone	a.24.17	Group V grass pollen allergen

Predicted Domain #2

Region A:
Residues: [79-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYIFPDSPGG TSYERYDCYK VPEWCLDDWH PSEKAMYPDY FAKREQWKKL RRESWEREVK  60
   61 QLQEETPPGG PLTEALPPAR KEGDLPPLWW YIVTRPRERP M

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits