YRC Public Data Repository - Protein Structure Prediction

Protein:	CALML5
Organism:	Homo sapiens
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CALML5.

Description	E-value	Query Range	Subject Range
gi\|50748592 - gi\|50748592\|ref\|XP_421316.1\| PREDICTED: similar to calmodulin 1; Calmodulin 1 (phosphorylase kinase,...	207.0	[0..2]	[146..512]
gi\|94471603 - gi\|94471603\|gb\|ABF21069.1\| mitochondrial calcium sensor cameleon 4mtD3cpv [synthetic construct]	192.0	[0..1]	[146..362]
gi\|114677917 - gi\|114677917\|ref\|XP_512771.2\| PREDICTED: similar to calmodulin [Pan troglodytes]	190.0	[0..1]	[146..122]
gi\|76628526 - gi\|76628526\|ref\|XP_874377.1\| PREDICTED: similar to calmodulin 1 [Bos taurus]	188.0	[0..2]	[146..77]
gi\|109084655 - gi\|109084655\|ref\|XP_001087048.1\| PREDICTED: similar to calmodulin 1 [Macaca mulatta]	180.0	[0..2]	[146..62]

Back

Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGELTPEEE AQYKKAFSAV DTDGNGTINA QELGAALKAT GKNLSEAQLR KLISEVDSDG  60
   61 DGEISFQEFL TAARKARAGL EDLQVAFRAF DQDGDGHITV DELRRAMAGL GQPLPQEELD 120
  121 AMIREADVDQ DGRVNYEEFA RMLAQE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	2f2oA
Description:	Structure of calmodulin bound to a calcineurin peptide: a new way of making an old binding mode
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits