YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL4
Organism:	Homo sapiens
Length:	427 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL4.

Description	E-value	Query Range	Subject Range
gi\|114657762 - gi\|114657762\|ref\|XP_001174724.1\| PREDICTED: similar to ribosomal protein isoform 1 [Pan troglodytes]	0.0	[2..427]	[52..477]
gi\|62087534 - gi\|62087534\|dbj\|BAD92214.1\| ribosomal protein L4 variant [Homo sapiens]	0.0	[1..427]	[15..441]
gi\|76642853 - gi\|76642853\|ref\|XP_871569.1\| PREDICTED: similar to ribosomal protein L4 isoform 2 [Bos taurus]	0.0	[1..427]	[1..422]
gi\|109081580, gi... - gi\|109081580\|ref\|XP_001110778.1\| PREDICTED: similar to ribosomal protein L4 isoform 4 [Macaca mulatt...	0.0	[1..427]	[1..427]
RL4_PONAB - 60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1 RL4_PONPY - 60S ribosomal protein L4 - Pongo pygmaeus (Orangutan)	0.0	[1..427]	[1..427]
RL4_RAT - 60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3	0.0	[1..427]	[1..421]

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Predicted Domain #1

Region A:
Residues: [1-427]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACARPLISV YSEKGESSGK NVTLPAVFKA PIRPDIVNFV HTNLRKNNRQ PYAVSELAGH  60
   61 QTSAESWGTG RAVARIPRVR GGGTHRSGQG AFGNMCRGGR MFAPTKTWRR WHRRVNTTQK 120
  121 RYAICSALAA SALPALVMSK GHRIEEVPEL PLVVEDKVEG YKKTKEAVLL LKKLKAWNDI 180
  181 KKVYASQRMR AGKGKMRNRR RIQRRGPCII YNEDNGIIKA FRNIPGITLL NVSKLNILKL 240
  241 APGGHVGRFC IWTESAFRKL DELYGTWRKA ASLKSNYNLP MHKMINTDLS RILKSPEIQR 300
  301 ALRAPRKKIH RRVLKKNPLK NLRIMLKLNP YAKTMRRNTI LRQARNHKLR VDKAAAAAAA 360
  361 LQAKSDEKAA VAGKKPVVGK KGKKAAVGVK KQKKPLVGKK AAATKKPAPE KKPAEKKPTT 420
  421 EEKKPAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.30103
Match:	1s1iD
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits