YRC Public Data Repository - Protein Structure Prediction

Protein:	C2orf43
Organism:	Homo sapiens
Length:	325 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C2orf43.

Description	E-value	Query Range	Subject Range
gi\|55777092, gi\|... - gi\|55777092\|gb\|AAH46986.1\| RIKEN cDNA 1110057K04 gene [Mus musculus], gi\|148665980\|gb\|EDK98396.1\| RI...	0.0	[1..324]	[1..325]
LDAH_RAT - Lipid droplet-associated hydrolase OS=Rattus norvegicus GN=Ldah PE=2 SV=1	0.0	[1..324]	[1..324]
gi\|114576374 - gi\|114576374\|ref\|XP_001141731.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	0.0	[1..325]	[1..325]
CB043_PONPY - Uncharacterized protein C2orf43 homolog - Pongo pygmaeus (Orangutan) LDAH_PONAB - Lipid droplet-associated hydrolase OS=Pongo abelii GN=LDAH PE=2 SV=1	0.0	[1..325]	[1..325]
gi\|109102195 - gi\|109102195\|ref\|XP_001109070.1\| PREDICTED: similar to CG9186-PB, isoform B [Macaca mulatta]	0.0	[1..325]	[1..325]
gi\|119903852, gi... - gi\|76630167\|ref\|XP_614958.2\| PREDICTED: similar to CG9186-PB, isoform B [Bos taurus], gi\|119903852\|r...	0.0	[1..325]	[1..325]
gi\|62822411 - gi\|62822411\|gb\|AAY14959.1\| unknown [Homo sapiens]	0.0	[1..262]	[1..262]

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Predicted Domain #1

Region A:
Residues: [1-325]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSELKEEIP VHEEFILCGG AETQVLKCGP WTDLFHDQSV KRPKLLIFII PGNPGFSAFY  60
   61 VPFAKALYSL TNRRFPVWTI SHAGHALAPK DKKILTTSED SNAQEIKDIY GLNGQIEHKL 120
  121 AFLRTHVPKD MKLVLIGHSI GSYFTLQMLK RVPELPVIRA FLLFPTIERM SESPNGRIAT 180
  181 PLLCWFRYVL YVTGYLLLKP CPETIKSLLI RRGLQVMNLE NEFSPLNILE PFCLANAAYL 240
  241 GGQEMMEVVK RDDETIKEHL CKLTFYYGTI DPWCPKEYYE DIKKDFPEGD IRLCEKNIPH 300
  301 AFITHFNQEM ADMIADSLKD DLSKM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.87
Match:	1u2eA
Description:	Crystal Structure of the C-C bond hydrolase MhpC
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits