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View Structure Prediction Details

Protein: RFT1
Organism: Homo sapiens
Length: 541 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RFT1.

Description E-value Query
Range
Subject
Range
gi|109039096 - gi|109039096|ref|XP_001083942.1| PREDICTED: similar to CG3149-PA isoform 2 [Macaca mulatta]
0.0 [1..541] [1..541]
gi|114587361 - gi|114587361|ref|XP_516524.2| PREDICTED: RFT1 homolog isoform 4 [Pan troglodytes]
0.0 [1..541] [1..541]
gi|73985461 - gi|73985461|ref|XP_533793.2| PREDICTED: similar to CG3149-PA [Canis familiaris]
0.0 [1..541] [82..622]
RFT1_MOUSE - Protein RFT1 homolog OS=Mus musculus GN=Rft1 PE=2 SV=2
0.0 [1..541] [1..541]
gi|209529743, gi... - gi|209529743|ref|NP_001129338.1| RFT1 homolog [Rattus norvegicus], gi|109503813|ref|XP_001063006.1| ...
0.0 [1..541] [1..541]
RFT1_XENTR - Protein RFT1 homolog OS=Xenopus tropicalis GN=rft1 PE=2 SV=1
0.0 [1..531] [1..530]

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Predicted Domain #1
Region A:
Residues: [1-225]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSQEVLGHA ARLASSGLLL QVLFRLITFV LNAFILRFLS KEIVGVVNVR LTLLYSTTLF  60
   61 LAREAFRRAC LSGGTQRDWS QTLNLLWLTV PLGVFWSLFL GWIWLQLLEV PDPNVVPHYA 120
  121 TGVVLFGLSA VVELLGEPFW VLAQAHMFVK LKVIAESLSV ILKSVLTAFL VLWLPHWGLY 180
  181 IFSLAQLFYT TVLVLCYVIY FTKLLGSPES TKLQTLPVSR ITDLL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [226-369]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNITRNGAFI NWKEAKLTWS FFKQSFLKQI LTEGERYVMT FLNVLNFGDQ GVYDIVNNLG  60
   61 SLVARLIFQP IEESFYIFFA KVLERGKDAT LQKQEDVAVA AAVLESLLKL ALLAGLTITV 120
  121 FGFAYSQLAL DIYGGTMLSS GSGP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [370-541]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLLRSYCLYV LLLAINGVTE CFTFAAMSKE EVDRYNFVML ALSSSFLVLS YLLTRWCGSV  60
   61 GFILANCFNM GIRITQSLCF IHRYYRRSPH RPLAGLHLSP VLLGTFALSG GVTAVSEVFL 120
  121 CCEQGWPARL AHIAVGAFCL GATLGTAFLT ETKLIHFLRT QLGVPRRTDK MT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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