YRC Public Data Repository - Protein Structure Prediction

Protein:	VPS26B
Organism:	Homo sapiens
Length:	336 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS26B.

Description	E-value	Query Range	Subject Range
gi\|109109374 - gi\|109109374\|ref\|XP_001083367.1\| PREDICTED: similar to vacuolar protein sorting 26 [Macaca mulatta]	0.0	[1..336]	[1..336]
gi\|71052182 - gi\|71052182\|gb\|AAH98386.1\| Vacuolar protein sorting 26 homolog B (S. pombe) [Homo sapiens]	0.0	[1..336]	[1..336]
VP26B_MOUSE - Vacuolar protein sorting-associated protein 26B OS=Mus musculus GN=Vps26b PE=1 SV=1 gi\|197333853, gi... - gi\|34866729\|ref\|XP_217099.2\| PREDICTED: similar to Vacuolar protein sorting 26 homolog (VPS26 protei...	0.0	[1..336]	[1..336]
VP26B_PONPY - Vacuolar protein sorting-associated protein 26B - Pongo pygmaeus (Orangutan) VP26B_PONAB - Vacuolar protein sorting-associated protein 26B OS=Pongo abelii GN=VPS26B PE=2 SV=1	0.0	[1..336]	[1..336]
gi\|114626374 - gi\|114626374\|ref\|XP_001157318.1\| PREDICTED: similar to Vacuolar protein sorting 26 homolog B (S. cer...	0.0	[1..336]	[1..336]
gi\|76636657 - gi\|76636657\|ref\|XP_869480.1\| PREDICTED: similar to vacuolar protein sorting 26 homolog B isoform 1 [...	0.0	[1..336]	[1..336]
VP26B_DANRE - Vacuolar protein sorting-associated protein 26B OS=Danio rerio GN=vps26b PE=2 SV=1	0.0	[1..331]	[1..331]
gi\|73954574 - gi\|73954574\|ref\|XP_849206.1\| PREDICTED: similar to Vacuolar protein sorting 26 homolog (VPS26 protei...	0.0	[26..336]	[205..515]
gi\|50760047 - gi\|50760047\|ref\|XP_417878.1\| PREDICTED: similar to Vacuolar protein sorting 26 homolog B (S. cerevis...	0.0	[1..336]	[1..336]

Back

Predicted Domain #1

Region A:
Residues: [1-336]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFFGFGQSV EVEILLNDAE SRKRAEHKTE DGKKEKYFLF YDGETVSGKV SLALKNPNKR  60
   61 LEHQGIKIEF IGQIELYYDR GNHHEFVSLV KDLARPGEIT QSQAFDFEFT HVEKPYESYT 120
  121 GQNVKLRYFL RATISRRLND VVKEMDIVVH TLSTYPELNS SIKMEVGIED CLHIEFEYNK 180
  181 SKYHLKDVIV GKIYFLLVRI KIKHMEIDII KRETTGTGPN VYHENDTIAK YEIMDGAPVR 240
  241 GESIPIRLFL AGYELTPTMR DINKKFSVRY YLNLVLIDEE ERRYFKQQEV VLWRKGDIVR 300
  301 KSMSHQAAIA SQRFEGTTSL GEVRTPSQLS DNNCRQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	152.0
Match:	2fauA
Description:	No description for 2fauA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits