YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|189054277, gi...
Organism:	Homo sapiens
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|189054277, gi....

Description	E-value	Query Range	Subject Range
gi\|109462508, gi... - gi\|109462508\|ref\|XP_001067013.1\| PREDICTED: similar to coiled-coil-helix-coiled-coil-helix domain co...	143.0	[0..9]	[96..59]
COA4_MOUSE - Cytochrome c oxidase assembly factor 4 homolog, mitochondrial OS=Mus musculus GN=COA4 PE=3 SV=1	125.0	[0..10]	[96..1]
CHCHD8 - coiled-coil-helix-coiled-coil-helix domain containing 8 ENSPTRT00000007550 - null gi\|117644372 - gi\|117644372\|emb\|CAL37680.1\| hypothetical protein [synthetic construct] HGNC:24604\|MIM:6... - domain containing 8	120.0	[0..10]	[96..1]
gi\|109107789 - gi\|109107789\|ref\|XP_001110707.1\| PREDICTED: similar to coiled-coil-helix-coiled-coil-helix domain co... CCDS8225.1_1 - null	118.0	[0..10]	[96..1]
COA4 - Protein that localizes to the mitochondrial intermembrane space via the Mia40p-Erv1p system; mutants... COA4_YEAST - Cytochrome oxidase assembly factor 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COA... gi\|190405283 - gi\|190405283\|gb\|EDV08550.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	103.0	[0..26]	[82..76]
gi\|44982746, gi\|... - gi\|45187962\|ref\|NP_984185.1\| ADR089Cp [Ashbya gossypii ATCC 10895], gi\|44982746\|gb\|AAS52009.1\| ADR08... gi\|44982746 - gi\|44982746\|gb\|AAS52009.1\| ADR089Cp [Ashbya gossypii ATCC 10895]	92.0	[0..26]	[82..19]
SPCC550.01c - CHCH domain protein YJV1_SCHPO - Coiled-coil-helix-coiled-coil-helix domain-containing protein C550.01c OS=Schizosaccharomyces pombe ...	84.0	[0..27]	[77..11]
gi\|50310587, gi\|... - gi\|50310587\|ref\|XP_455313.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644449\|emb\|CAG9802... gi\|49644449\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140]	83.0	[0..27]	[82..20]
gi\|49527410 - gi\|49527410\|emb\|CAG61050.1\| unnamed protein product [Candida glabrata] gi\|50291333, gi\|... - gi\|50291333\|ref\|XP_448099.1\| unnamed protein product [Candida glabrata], gi\|49527410\|emb\|CAG61050.1\|...	80.0	[0..25]	[82..21]

Back

Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFYRLPIPRM STSVPQGHTW TQRVKKDDEE EDPLDQLISR SGCAASHFAV QECMAQHQDW  60
   61 RQCQPQVQAF KDCMSEQQAR RQEELQRRQE QAGAHH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.963	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits