YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPL35
Organism:	Homo sapiens
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL35.

Description	E-value	Query Range	Subject Range
gi\|55729602 - gi\|55729602\|emb\|CAH91530.1\| hypothetical protein [Pongo abelii] gi\|197100216 - gi\|197100216\|ref\|NP_001125898.1\| mitochondrial ribosomal protein L35 [Pongo abelii]	3.0E-83	[1..188]	[1..188]
RM35_MOUSE - 39S ribosomal protein L35, mitochondrial OS=Mus musculus GN=Mrpl35 PE=2 SV=1	2.0E-81	[1..188]	[1..188]
gi\|34855981, gi\|... - gi\|34855981\|ref\|XP_216169.2\| PREDICTED: similar to mitochondrial ribosomal protein L35 [Rattus norve...	2.0E-80	[1..188]	[1..188]
RM35_BOVIN - 39S ribosomal protein L35, mitochondrial OS=Bos taurus GN=MRPL35 PE=2 SV=2	2.0E-77	[1..188]	[1..188]
gi\|22035594, gi\|... - gi\|22035594\|ref\|NP_663619.1\| mitochondrial ribosomal protein L35 isoform b [Homo sapiens], gi\|189069...	4.0E-74	[1..170]	[1..170]
gi\|73980894 - gi\|73980894\|ref\|XP_854825.1\| PREDICTED: similar to mitochondrial ribosomal protein L35 isoform a [Ca...	6.0E-69	[1..188]	[1..185]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASAFAGAV RAASGILRPL NILASSTYRN CVKNASLISA LSTGRFSHIQ TPVVSSTPRL  60
   61 TTSERNLTCG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [71-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HTSVILNRMA PVLPSVLKLP VRSLTYFSAR KGKRKTVKAV IDRFLRLHCG LWVRRKAGYK  60
   61 KKLWKKTPAR KKRLREFVFC NKTQSKLLDK MTTSFWKRRN WYVDDPYQKY HDRTNLKV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.95
Match:	2hgj7
Description:	No description for 2hgj7 was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits