YRC Public Data Repository - Protein Structure Prediction

Protein:	KCTD5
Organism:	Homo sapiens
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KCTD5.

Description	E-value	Query Range	Subject Range
gi\|239735501, gi... - gi\|74150666\|dbj\|BAE25476.1\| unnamed protein product [Mus musculus], gi\|239735501\|ref\|NP_081284.2\| po...	7.0E-72	[1..234]	[1..234]
gi\|109490290, gi... - gi\|62655810\|ref\|XP_220224.3\| PREDICTED: similar to potassium channel tetramerisation domain containi...	7.0E-71	[1..234]	[28..261]
gi\|73959457 - gi\|73959457\|ref\|XP_547178.2\| PREDICTED: similar to Potassium channel tetramerisation domain containi...	1.0E-67	[1..234]	[1..234]
gi\|76652270 - gi\|76652270\|ref\|XP_617480.2\| PREDICTED: similar to Potassium channel tetramerisation domain containi...	7.0E-67	[1..234]	[143..376]
gi\|50755761 - gi\|50755761\|ref\|XP_414889.1\| PREDICTED: hypothetical protein [Gallus gallus]	1.0E-63	[2..234]	[3..231]
gi\|46309467, gi\|... - gi\|46309467\|ref\|NP_996932.1\| potassium channel tetramerisation domain containing 5 [Danio rerio], gi...	2.0E-63	[13..234]	[4..224]
gi\|147900111, gi... - gi\|50604158\|gb\|AAH77515.1\| Kctd2-prov protein [Xenopus laevis], gi\|147900111\|ref\|NP_001086827.1\| pot...	2.0E-62	[20..234]	[1..216]

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Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAENHCELLS PARGGIGAGL GGGLCRRCSA GLGALAQRPG SVSKWVRLNV GGTYFLTTRQ  60
   61 TLCRDPKSFL YRLCQADPDL DSDKDETGAY LIDRDPTYFG PVLNYLRHGK LVINKDLAEE 120
  121 GVLEEAEFYN ITSLIKLVKD KIRERDSKTS QVPVKHVYRV LQCQEEELTQ MVSTMSDGWK 180
  181 FEQLVSIGSS YNYGNEDQAE FLCVVSKELH NTPYGTASEP SEKAKILQER GSRM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.0
Match:	2a79B
Description:	Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits