YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|32527954, gi\|...
Organism:	Homo sapiens
Length:	168 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|32527954, gi|....

Description	E-value	Query Range	Subject Range
APTX_PIG - Aprataxin OS=Sus scrofa GN=APTX PE=2 SV=1	4.0E-50	[1..168]	[189..356]
APTX_TAKRU - Aprataxin OS=Takifugu rubripes GN=aptx PE=2 SV=1	1.0E-49	[1..167]	[189..355]
gi\|114624091 - gi\|114624091\|ref\|XP_001157540.1\| PREDICTED: similar to aprataxin isoform a isoform 4 [Pan troglodyte...	3.0E-49	[1..168]	[174..341]
APTX_BOVIN - Aprataxin OS=Bos taurus GN=APTX PE=2 SV=1	7.0E-49	[1..168]	[189..356]
gi\|109111218 - gi\|109111218\|ref\|XP_001090958.1\| PREDICTED: similar to Aprataxin (Forkhead-associated domain histidi...	1.0E-48	[1..168]	[129..296]

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Predicted Domain #1

Region A:
Residues: [1-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDPKMQVYK DEQVVVIKDK YPKARYHWLV LPWTSISSLK AVAREHLELL KHMHTVGEKV  60
   61 IVDFAGSSKL RFRLGYHAIP SMSHVHLHVI SQDFDSPCLK NKKHWNSFNT EYFLESQAVI 120
  121 EMVQEAGRVT VRDGMPELLK LPLRCHECQQ LLPSIPQLKE HLRKHWTQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	1gupA
Description:	Galactose-1-phosphate uridylyltransferase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits