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View Structure Prediction Details

Protein: gi|215740582, gi...
Organism: Oryza sativa Japonica Group
Length: 561 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215740582, gi....

Description E-value Query
Range
Subject
Range
ROGF1_ARATH - Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2
772.0 [0..3] [561..5]

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Predicted Domain #1
Region A:
Residues: [1-469]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASASEDDAG SERCCGSYSP SADVSESETS SDCSAPTTTT TTRRFASSSS RGVASSSSSS  60
   61 LLPTPPPSSA AAFFLSAKPA ADLSEVDMMK ERFAKLLLGE DMSGSGKGVC TALAISNAIT 120
  121 NLSATVFGEL WRLEPMASAR KAMWTREMDW LLSVADSIVE LTPSIQELPD GGGQFEVMVP 180
  181 RPRSDLYMNL PALKKLDAML LAMIDGFKET EFWYVDRGIV VDDSGGPFSS SSSSCGRPSV 240
  241 RQEEKWWLPC PRVPPKGLSE DARRKLQQDR DCANQILKAA MAINSDVLAE MEIPEVYLES 300
  301 LPKSGKSCLG EIIYRYITAE QFSPECLLDC LDLSSEHHTL EVANRIEAAI HVWRLKGQKK 360
  361 STPQAKSKKS WGGKVKGLVG DTEKSHVLSQ RADGLLQSLR LRYPGLPQTS LDMNKIQYNK 420
  421 DVGQSILESY SRVLESLAFN IIARIDDVIY VDDATKKSAA ADSVSIFNR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 179.0
Match: 2ntxA
Description: No description for 2ntxA was found.

Predicted Domain #2
Region A:
Residues: [470-561]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIGVPVQKRI SPSPFSIQHT PYASPFATPT FCSSTPVTGS PGRVQPPLNK DNLPTKQEVK  60
   61 VEKLFSGDIE KVWTYAGNLS ARKDAGDAPE RD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle