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View Structure Prediction Details

Protein: gi|222637409, gi...
Organism: Oryza sativa Japonica Group
Length: 695 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|222637409, gi....

Description E-value Query
Range
Subject
Range
gi|50939065, gi|... - gi|50939065|ref|XP_479060.1| putative histone deacetylase [Oryza sativa (japonica cultivar-group)], ...
811.0 [0..12] [695..12]

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Predicted Domain #1
Region A:
Residues: [1-445]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAATTAAAA ARVGLLYDER MCAHATPDGE EHPENPERLR AIWRKLSADG VASRCMIMKA  60
   61 KEAEDKYIAS VHSQNHIKLM RSISSKEYDS RRNKIARKFN SIYFNKGSSE SAFLAAGSVI 120
  121 EVAEKVAAGE LSSAIALVRP PGHHAEHNEA MGFCLFNNVA IAADYLLNER TDLGIKKILI 180
  181 VDWDVHHGNG TQKMFYSDPR VLFFSVHRFD YGSFYPAEGD ASYCFIGEGD GKGYNINVPW 240
  241 EHGKCGDADY IAAWDHVLLP VAEAFNPDIV LVSAGFDAAL GDPLGGCCIT PNGYALLLTK 300
  301 LLGFAQGRIV MALEGGYNLR SIANSVSACA KVLLGDKFRF DTPDMQPFES SWRVIQAVRD 360
  361 ELKTFWPVLS NRLPENISLR SRPSQIELYS SGSDSEVEDL PDAIASVNII QITYGIISES 420
  421 LSKLNLDEDK IATKTTSSNV MVEGP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 96.30103
Match: 2nvrA
Description: No description for 2nvrA was found.

Predicted Domain #2
Region A:
Residues: [446-517]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDSVEPQNDG SAAVSTEGIS SLSSTWRSEL SKVYVWYASF GSNMWTPRFL CYIQGGKAEG  60
   61 MNIPCFGSHD TS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [518-587]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPRGSMWKTV PHRLFFGRSS TPCWGTGGVA FLNPEINHTE NSYVCMYKIT LEQFNDVLFQ  60
   61 ENRLVKENGE 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [588-695]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGKTESPDSP LIGLSEIEFV SRNKGVHLAP IKDSWYSNVL YLGEEDNLPI LTMTCPSSDV  60
   61 ERCRSGELPL CPPSKTYSAT LIRGLMEGKH LDADAAASYI NTAATRGL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle