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View Structure Prediction Details

Protein: gi|115468054, gi...
Organism: Oryza sativa Japonica Group
Length: 372 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115468054, gi....

Description E-value Query
Range
Subject
Range
PHS1_MAIZE - Protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Zea mays GN=PHS1 PE=1 SV=1
437.0 [0..1] [372..1]
gi|145335379, gi... - gi|71905393|gb|AAZ52674.1| hypothetical protein At1g10710 [Arabidopsis thaliana], gi|60547545|gb|AAX...
367.0 [0..24] [367..22]
gi|51090415 - gi|51090415|dbj|BAD35337.1| putative poor homologous synapsis 1 protein [Oryza sativa Japonica Group...
266.0 [0..152] [372..1]

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Predicted Domain #1
Region A:
Residues: [1-147]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADADVRSGA LLPARPTPQR RRQKWAVEFA RFFRTPRRDP SKPPPPGLRL VARGKLRHHG  60
   61 TWLPAASPAA LSISCPSQSF AVPVLTVSIG DVVFVRTDPA PLPRGAFCVH SQFFVASGYM 120
  121 CDTMPNKWEQ SGVSLNAFLY GLFTKEC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [148-372]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STETMDIRPS GSDYLCEDSS ASEYIASSGI HQSFEEPDQP VHRTETPALG YHAEPDEPIH  60
   61 RTEAPALSQP ETPSLRHHEA PEEPLLQPLL ATNIDTVFSG FPPSFTDMLT QFSCKTEKDA 120
  121 EEPYPVTATD HAPQEVSMLD TSHNGTHSLN LISHLFIWKS LSSFPDQSVF CAVAISTTSA 180
  181 NEIDVNRETS DIMTRIKTYI SDGAFHDMLF KLERVIDELG GDLSL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle