YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|113578427, gi...
Organism:	Oryza sativa Japonica Group
Length:	165 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|113578427, gi....

Description	E-value	Query Range	Subject Range
gi\|218199880 - gi\|218199880\|gb\|EEC82307.1\| hypothetical protein OsI_26568 [Oryza sativa Indica Group] gi\|50938545, gi\|... - gi\|50938545\|ref\|XP_478800.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|34393555\|d...	127.0	[0..91]	[165..57]
TF2H5_CHICK - General transcription factor IIH subunit 5 OS=Gallus gallus GN=GTF2H5 PE=3 SV=1	123.0	[0..96]	[161..1]
gi\|8778626, gi\|2... - gi\|8778626\|gb\|AAF79634.1\|AC025416_8 F5O11.12 [Arabidopsis thaliana], pir\|\|E86258 protein F5O11.12 [i...	121.0	[0..96]	[165..43]
gi\|62859795 - gi\|62859795\|ref\|NP_001017298.1\| general transcription factor IIH, polypeptide 5 [Xenopus (Silurana) ...	121.0	[0..96]	[161..1]
gi\|225716198 - gi\|225716198\|gb\|ACO13945.1\| General transcription factor IIH subunit 5 [Esox lucius] gi\|125846362, gi... - gi\|56208041\|emb\|CAI20614.1\| novel protein similar to vertebrate TFIIH basal transcription factor com...	121.0	[0..96]	[161..1]
gi\|109460743, gi... - gi\|186910271\|ref\|NP_001119560.1\| general transcription factor IIH, polypeptide 5 [Rattus norvegicus]... ENSCJAT00000006974 - null gi\|109072254 - gi\|109072254\|ref\|XP_001092693.1\| PREDICTED: similar to general transcription factor IIH, polypeptide... tr\|M3X5Q7\|M3X5Q7... - General transcription factor IIH subunit 5 OS=Felis catus GN=GTF2H5 PE=4 SV=1 GTF2H5 - general transcription factor IIH, polypeptide 5 CCDS5256.1_1 - null gi\|114609947, gi... - gi\|114609951\|ref\|XP_001145020.1\| PREDICTED: general transcription factor IIH, polypeptide 5 isoform ... TF2H5_BOVIN - General transcription factor IIH subunit 5 OS=Bos taurus GN=GTF2H5 PE=3 SV=1 tr\|G1U5T7\|G1U5T7... - pep:novel chromosome:oryCun2:12:148319860:148334709:1 gene:ENSOCUG00000025009 transcript:ENSOCUT0000... tr\|G3HFX4\|G3HFX4... - General transcription factor IIH subunit 5 OS=Cricetulus griseus GN=I79_009491 PE=4 SV=1 gi\|73946181 - gi\|73946181\|ref\|XP_855012.1\| PREDICTED: similar to general transcription factor IIH, polypeptide 5 [... gi\|167773397, gi... - gi\|208968459\|dbj\|BAG74068.1\| general transcription factor IIH, polypeptide 5 [synthetic construct], ...	120.0	[0..96]	[161..1]
TF2H5_MOUSE - General transcription factor IIH subunit 5 OS=Mus musculus GN=Gtf2h5 PE=1 SV=1	119.0	[0..96]	[161..1]
gi\|47224616 - gi\|47224616\|emb\|CAG03600.1\| unnamed protein product [Tetraodon nigroviridis]	118.0	[0..96]	[161..1]

Back

Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPNGNRRST LLGLDDKLRE KSKRISRSDS HRFNQLLEGI DGVQQAQHTT ASLDTCEHSP  60
   61 PLLAPPGRVV AGDLHRASRA GERIMVAFCS PKSR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [95-165]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NMVNAIKGLF ISCDVPMAQF IVNLNASMPA SDKFILHMLD PTHMFVQPHV AEMIRGKISE  60
   61 FRDQNSYEKP T

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	2jnjA
Description:	No description for 2jnjA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits